View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14389_high_8 (Length: 409)

Name: NF14389_high_8
Description: NF14389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14389_high_8
NF14389_high_8
[»] chr2 (2 HSPs)
chr2 (19-399)||(40668254-40668634)
chr2 (16-173)||(40721448-40721605)
[»] chr1 (1 HSPs)
chr1 (32-160)||(27979277-27979405)


Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 399
Target Start/End: Original strand, 40668254 - 40668634
Alignment:
Q  19 agttgcagagattaaagctgctcattttgaggagtccatgaagtatgcacgtaggagtgtcagtgatgctgatatacgcaaatatcaagcatttgctcag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40668254 agttgcagagattaaagctgctcattttgaggagtccatgaagtatgcacgtaggagtgtcagtgatgctgatatacgcaaatatcaagcatttgctcag 40668353  T
Q  119 actctacaacaatcaaggggatttggaagtgaatttagattttcaaataccgcaactagtgctattgtatctgaccaccttacaactactactggagggg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40668354 actctacaacaatcaaggggatttggaagtgaatttagattttcaaataccgcaactagtgctattgtatctgaccaccttacaactactactggagggg 40668453  T
Q  219 cagatgaagatgatctatatagttaggttttttatgatgtgtttctagacttccctttcaaatgggaaaacttcaagtctgctatttatttcacactatt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40668454 cagatgaagatgatctatatagttaggttttttatgatgtgtttctagacttccctttcaaatgggaaaacttcaagtctgctatttatttcacactatt 40668553  T
Q  319 aagtttaattaccataaattggctactaccttttatttatgtttatattatgaattattgatgatattcttcttagtataa 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40668554 aagtttaattaccataaattggctactaccttttatttatgtttatattatgaattattgatgatattctttttagtataa 40668634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 40721605 - 40721448
Alignment:
Q  16 agaagttgcagagattaaagctgctcattttgaggagtccatgaagtatgcacgtaggagtgtcagtgatgctgatatacgcaaatatcaagcatttgct 115  Q
    ||||||||| ||||| || || ||||| ||||||||||| ||||| |||||||| | ||||||||||||||| ||||||||||||||||| |||||||||    
T  40721605 agaagttgcggagatcaaggcggctcactttgaggagtcgatgaattatgcacgcaagagtgtcagtgatgcagatatacgcaaatatcaggcatttgct 40721506  T
Q  116 cagactctacaacaatcaaggggatttggaagtgaatttagattttcaaataccgcaa 173  Q
    |||||| ||||||||||  | || || |||||||||||||| ||| || ||| |||||    
T  40721505 cagactttacaacaatcttgaggtttcggaagtgaatttaggtttgcagatagcgcaa 40721448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 160
Target Start/End: Original strand, 27979277 - 27979405
Alignment:
Q  32 aaagctgctcattttgaggagtccatgaagtatgcacgtaggagtgtcagtgatgctgatatacgcaaatatcaagcatttgctcagactctacaacaat 131  Q
    ||||| || |||||||| || || |||||||||||||| || ||||| ||||||||||| || ||||| || ||||| ||||| || ||| | || || |    
T  27979277 aaagcagcacattttgaagaatcgatgaagtatgcacgaagaagtgttagtgatgctgacattcgcaagtaccaagcctttgcccaaactttgcagcagt 27979376  T
Q  132 caaggggatttggaagtgaatttagattt 160  Q
    |||| || ||||||  |||||| ||||||    
T  27979377 caagagggtttggatctgaattcagattt 27979405  T

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