View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14389_low_1 (Length: 732)
Name: NF14389_low_1
Description: NF14389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14389_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 684; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 684; E-Value: 0
Query Start/End: Original strand, 22 - 725
Target Start/End: Original strand, 29055822 - 29056524
Alignment:
| Q |
22 |
atgacaactttttcacaaagttgatcaaagatatagcaacactcttcactattcaaatttagaaaatcgatctttcgcatcagcatccagcaacaaataa |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29055822 |
atgacaactttttcacaaagttgatcaaagatatagcaacactcttcactattcaaatttagaaa-tcgatctttcgcatcagcatccagcaacaaataa |
29055920 |
T |
|
| Q |
122 |
agaagaaaagcttaatcatctagagtaaaaataaaaataacatgaagtattatattgagcatactttggaccagtgcagcccatagttgtccccaatcct |
221 |
Q |
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|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29055921 |
agaagaaaagcttaatcatctagactaaaaataaagataacatgaagtattatattgagcatactttggaccagtgcagcccatagttgtccccaatcct |
29056020 |
T |
|
| Q |
222 |
ccattaagcttcaaaacaacaagcttgtccaagaggtttttcacctctgaagaacctgaatcaatttcaattcattccataaacatgtcaatctattata |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29056021 |
ccattaagcttcaaaacaacaagcttgtccaagaggtttttcacctctgaagaacctgaatcaatttcaattcattccataaacatgtcaatctattata |
29056120 |
T |
|
| Q |
322 |
ccttcaaatcaaccaagtcgaacaaccagaacacaaagattaccctcaggagttggtgccaaactgtcataaggtacaaccacttcatcagtaggcgttt |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29056121 |
ccttcaaatcaaccaagtcgaacaaccagaacacaaagattaccctcaggagttggtgccaaactgtcataaggtacaaccacttcatcagtaggcgttt |
29056220 |
T |
|
| Q |
422 |
ggatcttactccactcaacatactgtgcttctccacttcgatcaatgacccatgcattgaaaaaacaatcatgaaaccaataacaaatataaagagcctg |
521 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29056221 |
ggatcttactccactcaacatgctgtgcttctccacttcgatcaatgacccatgcattgaaaaaacaatcatgaaaccaataacaaatataaagagcctg |
29056320 |
T |
|
| Q |
522 |
tttttacggcatattttgtaaaaaacaataatgaaaccaacaacaaatataaagagcctgtttgttacagcttatattgtacaaaatcacttttcaaaat |
621 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29056321 |
tttttacggcatattttgtaaaaaacaataatgaaaccaacaacaaatataaagagcctgtttgttacagcttatattgtacaaaatcacttttcaaaat |
29056420 |
T |
|
| Q |
622 |
tttcatccatttgttgcagattcttacaaaaatgagaatctgaaaataatttaaaaaatgtttcaaatgagaaactgtttcaagtagcttctgagaataa |
721 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29056421 |
tttcatccatttgttgcagattcttacaaaaatgagaatctgaaaataatttaaaaaatgtttcaaatgagaaactgtttcaagtagcttctgagaataa |
29056520 |
T |
|
| Q |
722 |
tcta |
725 |
Q |
| |
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|||| |
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|
| T |
29056521 |
tcta |
29056524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 181 - 253
Target Start/End: Complemental strand, 32849039 - 32848967
Alignment:
| Q |
181 |
catactttggaccagtgcagcccatagttgtccccaatcctccattaagcttcaaaacaacaagcttgtccaa |
253 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || |||||||| ||||| |
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| T |
32849039 |
catactttggaccagtgcaacccatagttgtccccaagcctccattaagcttcaacaccacaagcttatccaa |
32848967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 368 - 458
Target Start/End: Complemental strand, 32848826 - 32848736
Alignment:
| Q |
368 |
caggagttggtgccaaactgtcataaggtacaaccacttcatcagtaggcgtttggatcttactccactcaacatactgtgcttctccact |
458 |
Q |
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|||||||||| |||||| | |||||||| ||||| ||||||||||| ||||| |||||||||||||| || |||| ||| ||||| ||||| |
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| T |
32848826 |
caggagttggcgccaaagtatcataaggcacaacaacttcatcagttggcgtctggatcttactccattctacatgctgcgcttcaccact |
32848736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 621 - 690
Target Start/End: Complemental strand, 2811322 - 2811253
Alignment:
| Q |
621 |
ttttcatccatttgttgcagattcttacaaaaatgagaatctgaaaataatttaaaaaatgtttcaaatg |
690 |
Q |
| |
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|||||||| |||||| || ||||||| |||| |||||||||||||||||| |||||| ||||||||||| |
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| T |
2811322 |
ttttcatctgtttgttacaaattcttaaaaaattgagaatctgaaaataatctaaaaactgtttcaaatg |
2811253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 700
Target Start/End: Complemental strand, 21479629 - 21479534
Alignment:
| Q |
606 |
aatcacttttcaaaatttt-catccatttgttgcagattcttacaaaaatgagaatctgaaaataatttaaaaaatgtttcaaatgagaaactgtt |
700 |
Q |
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|||||||||| | |||||| |||||||||||| ||| || ||| |||||| ||||||| |||| ||| |||||| | |||||||||||| ||||| |
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| T |
21479629 |
aatcacttttaagaattttgcatccatttgttacagctttttaaaaaaatcagaatctaaaaaaaatctaaaaacagcttcaaatgagaagctgtt |
21479534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 631 - 700
Target Start/End: Complemental strand, 42429792 - 42429723
Alignment:
| Q |
631 |
tttgttgcagattcttacaaaaatgagaatctgaaaataatttaaaaaatgtttcaaatgagaaactgtt |
700 |
Q |
| |
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|||||| ||| || ||| |||||| ||||||| |||||||| |||||| |||||||||||||| ||||| |
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| T |
42429792 |
tttgttacagctttttaaaaaaatcagaatctaaaaataatctaaaaacagtttcaaatgagaagctgtt |
42429723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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