View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14389_low_11 (Length: 392)
Name: NF14389_low_11
Description: NF14389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14389_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 153 - 384
Target Start/End: Original strand, 8511615 - 8511844
Alignment:
| Q |
153 |
gagatcaaacataaatttggctcatgcatttcgatgggtcattctaatatgcaacattcattttttgctcatccattacattataatgacttttttaatc |
252 |
Q |
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| T |
8511615 |
gagatcaaacttaaagttgactcatgcatttcgatgggtcattctaatatgcttcattcattttttgctcatccattacattataatgatttctttaatc |
8511714 |
T |
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| Q |
253 |
tttcaacattacattggctaaaaagtcgtggttgtacttgtacattgacttgaaagtcattgttatcatactataggagcattgattttggtttcctatt |
352 |
Q |
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| T |
8511715 |
tttcaacattacattggctaaaaagttgtggtcgtacatgtacattgacttgaaagtcattgttatcgtattataggagcattga--ttgatttcctatt |
8511812 |
T |
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| Q |
353 |
tttcctacctaattggtttcatttttcatctc |
384 |
Q |
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| T |
8511813 |
tttactacctgattggttttatttttcatctc |
8511844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 191 - 384
Target Start/End: Original strand, 8521241 - 8521432
Alignment:
| Q |
191 |
tcattctaatatgcaacattcattttttgctcatccattacattataatgactttttt-aatctttcaacattacattggctaaaaagtcgtggttgtac |
289 |
Q |
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| T |
8521241 |
tcattctaacaagcatcattcatttttggttcatccattacga-ataccgacttttttgaatctttcaacgttacattggctaaaaagctgtggttgtac |
8521339 |
T |
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| Q |
290 |
ttgtacattgacttgaaagtcattgttatcatactataggagcattgattttggtttcctatttttcctacctaattggtttcatttttcatctc |
384 |
Q |
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| T |
8521340 |
atgtagattgactttaaagtcattgttatcgtattataggagcatcga--ttggtttgttattttttctagctgagtggtttgatatttcatctc |
8521432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 8529611 - 8529657
Alignment:
| Q |
1 |
ttattatagttttgcaataatatcatgctctagagttaaccagggtt |
47 |
Q |
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| T |
8529611 |
ttattatagttttgcaataatatcatgttctagagttaaccagggtt |
8529657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 8511466 - 8511514
Alignment:
| Q |
7 |
tagttttgcaataatatcatgctctagagttaaccagggttataatgac |
55 |
Q |
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| T |
8511466 |
tagttttgtaataatatcatgctgtagagttaatcagagttgtaatgac |
8511514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 251 - 382
Target Start/End: Original strand, 12251036 - 12251163
Alignment:
| Q |
251 |
tctttcaacattacattggctaaaaagtcgtggttgtacttgtacattgacttgaaagtcattgttatcatactataggagcattgattttggtttccta |
350 |
Q |
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| T |
12251036 |
tctttgaacatgacattggctaaaaagttgtggttgtacatgtacaatgactttaaaatcattgttatcgtattata-gagcattga--ttggtttgat- |
12251131 |
T |
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| Q |
351 |
tttttcctacctaattggtttcatttttcatc |
382 |
Q |
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| T |
12251132 |
tttttcctagctaattagtttgatttttcatc |
12251163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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