View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14389_low_12 (Length: 391)

Name: NF14389_low_12
Description: NF14389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14389_low_12
NF14389_low_12
[»] chr2 (4 HSPs)
chr2 (21-384)||(43412682-43413048)
chr2 (197-279)||(929010-929092)
chr2 (141-263)||(34504177-34504300)
chr2 (139-187)||(22651102-22651150)
[»] chr7 (5 HSPs)
chr7 (197-279)||(32854239-32854321)
chr7 (200-263)||(48723328-48723391)
chr7 (197-261)||(29724368-29724432)
chr7 (141-254)||(42121329-42121442)
chr7 (197-279)||(33645263-33645349)
[»] chr3 (8 HSPs)
chr3 (141-264)||(48855510-48855633)
chr3 (141-280)||(53683921-53684061)
chr3 (197-263)||(54362031-54362097)
chr3 (141-260)||(37311647-37311766)
chr3 (210-262)||(32737826-32737878)
chr3 (140-183)||(53436172-53436215)
chr3 (197-239)||(34408058-34408100)
chr3 (197-257)||(43271651-43271711)
[»] chr5 (5 HSPs)
chr5 (142-255)||(141319-141432)
chr5 (197-261)||(6818578-6818642)
chr5 (141-187)||(12289080-12289126)
chr5 (197-263)||(29429610-29429676)
chr5 (209-283)||(6809624-6809698)
[»] chr1 (2 HSPs)
chr1 (199-282)||(31820642-31820724)
chr1 (197-262)||(3150653-3150718)
[»] chr4 (4 HSPs)
chr4 (141-279)||(3527864-3528003)
chr4 (197-263)||(50685593-50685659)
chr4 (141-262)||(8488651-8488772)
chr4 (197-282)||(13901996-13902080)
[»] chr6 (2 HSPs)
chr6 (198-263)||(7509734-7509799)
chr6 (141-187)||(5456575-5456621)
[»] chr8 (1 HSPs)
chr8 (206-260)||(12883128-12883182)


Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 21 - 384
Target Start/End: Complemental strand, 43413048 - 43412682
Alignment:
Q  21 atagcaaccaatttacttctcaacttagcccc-tcacaaggagagatttactataataatcaaatataaaaggggttttgctaacttatgttttaagcca 119  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||    
T  43413048 atagcaaccaatttacttctcaacttagccccctcacaaggagagatttactataataatcaaatataaaaggg-tcttgctaacttatgttttaaggca 43412950  T
Q  120 tatattaaacaatctaaaaataaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaatgnnnnnnnttaaattctaatgcattgatta- 218  Q
    ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||       ||||||||||||| |||||||      
T  43412949 tatgttaaacaatctaaaaataaaagtagaaacattctcttaaattttgtgtattaaattaatcaaaatgaaaaaaattaaattctaatgtattgatttt 43412850  T
Q  219 --gaacaaattatttccacttttaactaattaacttgtgccttaaggatacacgttagcattttccaatacaaaataatattttctcgcttatatattcg 316  Q
      || ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43412849 ttgagcaaattatttccacttttaactaattaacttgtgccttaagggcacacgttagcattttccaatacaaaataatattttctcacttatatattcg 43412750  T
Q  317 ctcgcatatgtgaggaacactagatttggttttcccccattctaagttgctctaacatagtataatct 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43412749 ctcgcatatgtgaggaacactagatttggttttcccccattctaagttgctctaacatagtataatct 43412682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 197 - 279
Target Start/End: Complemental strand, 929092 - 929010
Alignment:
Q  197 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaaggatacacgttagcattt 279  Q
    |||||||| ||||||||||||| |||||| |||||| |||||| |||  |||||||||| |||||||| ||| |||| |||||    
T  929092 ttaaattcaaatgcattgattacaacaaaatatttctacttttgactctttaacttgtgtcttaaggacacaagttaacattt 929010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 263
Target Start/End: Complemental strand, 34504300 - 34504177
Alignment:
Q  141 aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaa-tgnnnnnnnttaaattctaatgcattgattagaacaaattatttccactttt 239  Q
    ||||||| |||||||||||||||||||||| ||| | ||||| |||| |         ||||||| ||||||||||||  ||||| ||||||| ||||||    
T  34504300 aaaagtaaaaatattctcttaaattttgtgcattcaattaattaaaagtaaaaaaaactaaattcaaatgcattgattgcaacaacttatttctactttt 34504201  T
Q  240 aactaattaacttgtgccttaagg 263  Q
     | | ||||||||||| |||||||    
T  34504200 gattcattaacttgtgtcttaagg 34504177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 22651102 - 22651150
Alignment:
Q  139 ataaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaa 187  Q
    |||||| |||||||||||||||||||||| || ||| | ||||||||||    
T  22651102 ataaaaatagaaatattctcttaaattttatgcattcaattaatcaaaa 22651150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 197 - 279
Target Start/End: Complemental strand, 32854321 - 32854239
Alignment:
Q  197 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaaggatacacgttagcattt 279  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||  ||| ||||||||||    
T  32854321 ttaatttcaaatgcattgattagaacaaattatttccacttttaactcattaacttgtgttttaagggcacaggttagcattt 32854239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 48723328 - 48723391
Alignment:
Q  200 aattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaagg 263  Q
    ||||| |||||||| |||| |||||| |||||||||||| |||| |||||||||||||||||||    
T  48723328 aattcaaatgcattcattacaacaaaatatttccactttaaactcattaacttgtgccttaagg 48723391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 261
Target Start/End: Original strand, 29724368 - 29724432
Alignment:
Q  197 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaa 261  Q
    |||||||| |||||||| |||| ||||||||||||| |||||| ||| ||| |||||| ||||||    
T  29724368 ttaaattcaaatgcatttattacaacaaattatttctacttttgacttatttacttgtaccttaa 29724432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 42121442 - 42121329
Alignment:
Q  141 aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaatgnnnnnnnttaaattctaatgcattgattagaacaaattatttccactttta 240  Q
    ||||||||||| |||||||||||||||||  ||| | ||||| ||||         |||||||| |||||||| |||| ||||||||||||  | |||||    
T  42121442 aaaagtagaaacattctcttaaattttgtacattcaattaatgaaaagtgaaaaaattaaattcaaatgcattaattacaacaaattatttatattttta 42121343  T
Q  241 actaattaacttgt 254  Q
    ||| ||||||||||    
T  42121342 actcattaacttgt 42121329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 279
Target Start/End: Original strand, 33645263 - 33645349
Alignment:
Q  197 ttaaattctaatgcattgattagaacaaattatttccacttttaact-----aattaacttgtgccttaaggatacacgttagcattt 279  Q
    |||||||| ||||||||| ||| |||||||||||||||||||| |||      |||||||||||||||||||  ||| ||||||||||    
T  33645263 ttaaattcaaatgcattg-ttacaacaaattatttccacttttgactcattacattaacttgtgccttaagggcacaagttagcattt 33645349  T

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Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 141 - 264
Target Start/End: Original strand, 48855510 - 48855633
Alignment:
Q  141 aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaatgnnnnnnnttaaattctaatgcattgattagaacaaattatttccactttta 240  Q
    |||||||||||||||||||| ||||||||||||| | |||||| |||         |||||||| |||| ||| |||| ||||| |||||||||||||||    
T  48855510 aaaagtagaaatattctcttgaattttgtgtattcaattaatctaaaattaaagaattaaattcaaatgaattaattacaacaatttatttccactttta 48855609  T
Q  241 actaattaacttgtgccttaagga 264  Q
     || ||||||||||||||||||||    
T  48855610 gctcattaacttgtgccttaagga 48855633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 280
Target Start/End: Complemental strand, 53684061 - 53683921
Alignment:
Q  141 aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaatgnnnnnnn-ttaaattctaatgcattgattagaacaaattatttccactttt 239  Q
    ||||||||||||||||||||| |||||||||||| | |||||||||| |        |||||||| ||| |||| |||| |||||||||||| |||||||    
T  53684061 aaaagtagaaatattctcttatattttgtgtattcaattaatcaaaaagtcaaaaaattaaattcaaatacattaattaaaacaaattattttcactttt 53683962  T
Q  240 aactaattaacttgtgccttaaggatacacgttagcatttt 280  Q
      || |||||||||||||||||||  ||| |||| ||||||    
T  53683961 ggctcattaacttgtgccttaagggcacaagttaacatttt 53683921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 197 - 263
Target Start/End: Complemental strand, 54362097 - 54362031
Alignment:
Q  197 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaagg 263  Q
    |||||||| ||||||||||||| ||| || |||||| |||||| ||| |||||||||||||||||||    
T  54362097 ttaaattcaaatgcattgattacaaccaaatatttctacttttgactcattaacttgtgccttaagg 54362031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 260
Target Start/End: Complemental strand, 37311766 - 37311647
Alignment:
Q  141 aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaatgnnnnnnnttaaattctaatgcattgattagaacaaattatttccactttta 240  Q
    ||||||||||| ||||||||  |||||||| ||| | ||||||||||         |||||||| |||||||| |||| ||||||||||||  ||||||     
T  37311766 aaaagtagaaacattctcttgtattttgtgcattcaattaatcaaaagtcaaaaaattaaattcaaatgcattaattacaacaaattatttatacttttg 37311667  T
Q  241 actaattaacttgtgcctta 260  Q
     || ||||||||||||||||    
T  37311666 tctcattaacttgtgcctta 37311647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 32737826 - 32737878
Alignment:
Q  210 cattgattagaacaaattatttccacttttaactaattaacttgtgccttaag 262  Q
    ||||||||| |||||||||||| || |||| ||| ||||||||||||||||||    
T  32737826 cattgattacaacaaattattttcatttttgactcattaacttgtgccttaag 32737878  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 140 - 183
Target Start/End: Original strand, 53436172 - 53436215
Alignment:
Q  140 taaaagtagaaatattctcttaaattttgtgtattaagttaatc 183  Q
    |||||||||||||||| |||||||||||||||||| | ||||||    
T  53436172 taaaagtagaaatattttcttaaattttgtgtatttaattaatc 53436215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 34408100 - 34408058
Alignment:
Q  197 ttaaattctaatgcattgattagaacaaattatttccactttt 239  Q
    |||||||  ||||||||||||| ||||||||||||||||||||    
T  34408100 ttaaatttaaatgcattgattacaacaaattatttccactttt 34408058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 43271711 - 43271651
Alignment:
Q  197 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgcc 257  Q
    |||||||| |||||||| |||| |||| | ||||||||||||| | | |||||||||||||    
T  43271711 ttaaattcaaatgcatttattacaacagaatatttccacttttgattcattaacttgtgcc 43271651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 255
Target Start/End: Complemental strand, 141432 - 141319
Alignment:
Q  142 aaagtagaaatattctcttaaattttgtgtattaagttaatcaaaatgnnnnnnnttaaattctaatgcattgattagaacaaattatttccacttttaa 241  Q
    ||||||||||||||||||| ||||||||| ||| | ||||||||||         |||||||| |||||||| |||| ||||| |||||||||||||||     
T  141432 aaagtagaaatattctcttgaattttgtgcattcaattaatcaaaagttaaagaattaaattcaaatgcattaattacaacaatttatttccacttttag 141333  T
Q  242 ctaattaacttgtg 255  Q
    || |||||||||||    
T  141332 ctcattaacttgtg 141319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 197 - 261
Target Start/End: Complemental strand, 6818642 - 6818578
Alignment:
Q  197 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaa 261  Q
    |||||||| ||| ||||||||| |||||||||||| || |||||||| |||||||||||| ||||    
T  6818642 ttaaattcaaatacattgattacaacaaattattttcatttttaactcattaacttgtgctttaa 6818578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 12289126 - 12289080
Alignment:
Q  141 aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaa 187  Q
    |||||||||||||||||||| ||||||||||||| | ||||||||||    
T  12289126 aaaagtagaaatattctcttgaattttgtgtattcaattaatcaaaa 12289080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 263
Target Start/End: Complemental strand, 29429676 - 29429610
Alignment:
Q  197 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaagg 263  Q
    |||||||| |||| ||| |||| |||||| ||||||||||||| |||  ||||||||||||||||||    
T  29429676 ttaaattcaaatgtattaattacaacaaaatatttccacttttgactctttaacttgtgccttaagg 29429610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 283
Target Start/End: Complemental strand, 6809698 - 6809624
Alignment:
Q  209 gcattgattagaacaaattatttccacttttaactaattaacttgtgccttaaggatacacgttagcattttcca 283  Q
    ||||||||||  ||||||||||||||||||| |||  ||||||||||  |||| || ||| |||| |||||||||    
T  6809698 gcattgattacgacaaattatttccacttttgactctttaacttgtgttttaaagacacaagttaacattttcca 6809624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 282
Target Start/End: Original strand, 31820642 - 31820724
Alignment:
Q  199 aaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaaggatacacgttagcattttcc 282  Q
    |||||| ||||| ||||||| |||||||||||||||||||| ||| ||||||||| |||||||||  ||| |||| ||||||||    
T  31820642 aaattcaaatgc-ttgattacaacaaattatttccacttttgacttattaacttgcgccttaagggcacaagttaacattttcc 31820724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 3150718 - 3150653
Alignment:
Q  197 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaag 262  Q
    |||||||| |||| ||| |||| |||||||||||||||||||| |||  |||||||||| ||||||    
T  3150718 ttaaattcaaatgtattaattacaacaaattatttccacttttgacttgttaacttgtgtcttaag 3150653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 141 - 279
Target Start/End: Complemental strand, 3528003 - 3527864
Alignment:
Q  141 aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaa-tgnnnnnnnttaaattctaatgcattgattagaacaaattatttccactttt 239  Q
    ||||||||||| ||||||||| |||||||| ||| | |||||||||| |        |||||||| ||||||||||||| |||||| |||||| |||||     
T  3528003 aaaagtagaaacattctcttatattttgtgcattcaattaatcaaaaataaaataaattaaattcaaatgcattgattacaacaaaatatttctactttg 3527904  T
Q  240 aactaattaacttgtgccttaaggatacacgttagcattt 279  Q
     ||| ||| ||||||| |||||||| ||| |||| |||||    
T  3527903 gacttattgacttgtgtcttaaggacacatgttaacattt 3527864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 197 - 263
Target Start/End: Complemental strand, 50685659 - 50685593
Alignment:
Q  197 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaagg 263  Q
    |||||||| ||| |||| |||| ||||||||||||||||||||  || |||||||||||||||||||    
T  50685659 ttaaattcaaatacatttattacaacaaattatttccacttttggctcattaacttgtgccttaagg 50685593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 141 - 262
Target Start/End: Original strand, 8488651 - 8488772
Alignment:
Q  141 aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaatgnnnnnnnttaaattctaatgcattgattagaacaaattatttccactttta 240  Q
    ||||||||||| ||||||||  |||||||||||| | ||||||||||         |||||||| |||||||| |||| | ||||||||||||  |||||    
T  8488651 aaaagtagaaacattctcttgtattttgtgtattcaattaatcaaaagtcaaaaaattaaattcaaatgcattaattacaccaaattatttcctttttta 8488750  T
Q  241 actaattaacttgtgccttaag 262  Q
     || |||||||||||| |||||    
T  8488751 gctcattaacttgtgctttaag 8488772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 282
Target Start/End: Complemental strand, 13902080 - 13901996
Alignment:
Q  197 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaaggatacacgttagcattttcc 282  Q
    |||||||| ||||||||||||| ||| || |||||| |||||| ||| |||| ||| |||||||| | |||| |||| ||||||||    
T  13902080 ttaaattcaaatgcattgattacaaccaaatatttctacttttgactcattacctt-tgccttaaaggtacaagttaacattttcc 13901996  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 263
Target Start/End: Original strand, 7509734 - 7509799
Alignment:
Q  198 taaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaagg 263  Q
    ||||||| ||||||||||||| |||| | |||||| |||||| ||| |||||||||||||||||||    
T  7509734 taaattcaaatgcattgattacaacacaatatttctacttttgactcattaacttgtgccttaagg 7509799  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 5456575 - 5456621
Alignment:
Q  141 aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaa 187  Q
    |||| ||||||||||||||| ||||||||||||| | ||||||||||    
T  5456575 aaaaatagaaatattctcttgaattttgtgtattcaattaatcaaaa 5456621  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 12883128 - 12883182
Alignment:
Q  206 aatgcattgattagaacaaattatttccacttttaactaattaacttgtgcctta 260  Q
    |||||||| |||| |||||||||||| ||||| ||||| ||||||||||||||||    
T  12883128 aatgcattaattacaacaaattattttcacttataactcattaacttgtgcctta 12883182  T

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