View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14389_low_2 (Length: 649)
Name: NF14389_low_2
Description: NF14389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14389_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 22 - 632
Target Start/End: Complemental strand, 44299695 - 44299088
Alignment:
| Q |
22 |
ccctaatcatcaataaaaatacccaacacacacaacacattcaccatctccttcaagtgcaacaaagtaatttcatccaatttcaattcaaaacaataac |
121 |
Q |
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| T |
44299695 |
ccctaatcatcaataaaaatacccaacacacacaacacattcaccatctccttcaagtgcaacaaagtaatttaatccaatttcaattcaaaacaataac |
44299596 |
T |
|
| Q |
122 |
ata-tgccatctataaaacctcgtatcgtaacaacctttttaatcactcacatcatcatnnnnnnnnnnnnnnnnacacaaccccactttagttaggttg |
220 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||| |
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| T |
44299595 |
ataatgccatctataaaacctcgtatcgtaacaacctttttactcactcacatcatcattgtctctctctct----cacaaccccactttagttacgttg |
44299500 |
T |
|
| Q |
221 |
tttcttccatgcataacaatatggcaagattaaacaaccctagcattttagttacaatcattttgtttctattagtaacattaccatttgcctcatgtga |
320 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44299499 |
tttcttccatgcataacaatatggcaagattaaataaccctagcattttagttacaatcattttgtttctattagtaacattaccatttgcctcatgtga |
44299400 |
T |
|
| Q |
321 |
atcagagtgctcgtccaaatatgaaggtgtatgtcacaacaaaaatgaagcactaaagctaaaattaattgcaatattttccatattagtgacgagcatg |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44299399 |
atcagagtgctcgtccaaatatgaaggtgtatgtcacaacaaaaatgaagcactaaagctaaaattaattgcaatattttccatattagtgacgagcatg |
44299300 |
T |
|
| Q |
421 |
attggaatttgtattccaattttcacaacttcgatcccagcgttaaaacccgacggagatttattcgtgatcgttaaggcttttgcctccggtgttatac |
520 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44299299 |
attggaatttgtattccaattttcacaacttcgatcccagcattaaaacccgacggagatttattcgtgatcattaaggcttttgcctccggtgttatac |
44299200 |
T |
|
| Q |
521 |
tcgctaccggttacatgcacgtgatgccagattcatttcaggatctaaattctccttgtttgcctgaacggccttggaaaaaatttccattcaccacttt |
620 |
Q |
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| T |
44299199 |
tcgctaccggttacatgcacgtgatgccagattcatttcaggatctaaattctccttgtttgcctgaacggccttggaaaaaatttccattcaccacttt |
44299100 |
T |
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| Q |
621 |
tattgctatggt |
632 |
Q |
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|||||||||||| |
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| T |
44299099 |
tattgctatggt |
44299088 |
T |
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