View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14389_low_22 (Length: 226)
Name: NF14389_low_22
Description: NF14389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14389_low_22 |
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| [»] scaffold0062 (3 HSPs) |
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| [»] scaffold0443 (1 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 48083 - 47886
Alignment:
| Q |
19 |
atacaattgatggtagtggggtttgagacgctctgttggagcaatggacaccagttttatggatttgcaactcttcttgagttttcttatgagttctcct |
118 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48083 |
atacaatttatggtagtggggtttgagaagctctgttggagcaatggacaccagttttatggatttggaactcttcttgagttttcttatgagttctcct |
47984 |
T |
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| Q |
119 |
atgcaggaagaaaactcatcctgattgcaattgctgtactcatagttaatatcaataccatcaattatgtcatcgcaatggcacccgtctgtgctgct |
216 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
47983 |
atgcaggaagaaaactcatccggattgcaattgctgtactcatagttaatatcaataccatcaattatgtcatcgcaatggcactcgtcggtgctgct |
47886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 60622 - 60425
Alignment:
| Q |
19 |
atacaattgatggtagtggggtttgagacgctctgttggagcaatggacaccagttttatggatttgcaactcttcttgagttttcttatgagttctcct |
118 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
60622 |
atacaatttatggtagtggggtttgagaagctctgttggagcaatggacaccagttttatggatttggaactcttcttgagttttcttatgagttctcct |
60523 |
T |
|
| Q |
119 |
atgcaggaagaaaactcatcctgattgcaattgctgtactcatagttaatatcaataccatcaattatgtcatcgcaatggcacccgtctgtgctgct |
216 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
60522 |
atgcaggaagaaaactcatccggattgcaattgctgtactcatagttaatatcaataccatcaattatgtcatcgcaatggcactcgtcggtgctgct |
60425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 72741 - 72544
Alignment:
| Q |
19 |
atacaattgatggtagtggggtttgagacgctctgttggagcaatggacaccagttttatggatttgcaactcttcttgagttttcttatgagttctcct |
118 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
72741 |
atacaatttatggtagtggggtttgagaagctctgttggagcaatggacaccagttttatggatttggaactcttcttgagttttcttatgagttctcct |
72642 |
T |
|
| Q |
119 |
atgcaggaagaaaactcatcctgattgcaattgctgtactcatagttaatatcaataccatcaattatgtcatcgcaatggcacccgtctgtgctgct |
216 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
72641 |
atgcaggaagaaaactcatccggattgcaattgctgtactcatagttaatatcaataccatcaattatgtcatcgcaatggcactcgtcggtgctgct |
72544 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 18691432 - 18691235
Alignment:
| Q |
19 |
atacaattgatggtagtggggtttgagacgctctgttggagcaatggacaccagttttatggatttgcaactcttcttgagttttcttatgagttctcct |
118 |
Q |
| |
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|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
18691432 |
atacaatttatggtagtggggtttgagaagctctgttggagcaatggacaccagttttatggatttggaactcttcttgagttttcttatgagttctcct |
18691333 |
T |
|
| Q |
119 |
atgcaggaagaaaactcatcctgattgcaattgctgtactcatagttaatatcaataccatcaattatgtcatcgcaatggcacccgtctgtgctgct |
216 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
18691332 |
atgcaggaagaaaactcatccggattgcaattgctgtactcatagttaatatcaataccatcaattatgtcatcgcaatggcactcgtcggtgctgct |
18691235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 15699171 - 15698974
Alignment:
| Q |
19 |
atacaattgatggtagtggggtttgagacgctctgttggagcaatggacaccagttttatggatttgcaactcttcttgagttttcttatgagttctcct |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15699171 |
atacaatttatggtagtggggtttgagaagctctgttggagcaatggacaccagttttatggatttggaactcttcttgagttttcttatgagttctcct |
15699072 |
T |
|
| Q |
119 |
atgcaggaagaaaactcatcctgattgcaattgctgtactcatagttaatatcaataccatcaattatgtcatcgcaatggcacccgtctgtgctgct |
216 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
15699071 |
atgcaggaagaaaactcatccggattgcaattgctgtactcatagttaatatcaataccatcaattatgtcatcgcaatggcactcgtcggtgctgct |
15698974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 15711710 - 15711513
Alignment:
| Q |
19 |
atacaattgatggtagtggggtttgagacgctctgttggagcaatggacaccagttttatggatttgcaactcttcttgagttttcttatgagttctcct |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15711710 |
atacaatttatggtagtggggtttgagaagctctgttggagcaatggacaccagttttatggatttggaactcttcttgagttttcttatgagttctcct |
15711611 |
T |
|
| Q |
119 |
atgcaggaagaaaactcatcctgattgcaattgctgtactcatagttaatatcaataccatcaattatgtcatcgcaatggcacccgtctgtgctgct |
216 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
15711610 |
atgcaggaagaaaactcatccggattgcaattgctgtactcatagttaatatcaataccatcaattatgtcatcgcaatggcactcgtcggtgctgct |
15711513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 15724188 - 15723991
Alignment:
| Q |
19 |
atacaattgatggtagtggggtttgagacgctctgttggagcaatggacaccagttttatggatttgcaactcttcttgagttttcttatgagttctcct |
118 |
Q |
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|
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15724188 |
atacaatttatggtagtggggtttgagaagctctgttggagcaatggacaccagttttatggatttggaactcttcttgagttttcttatgagttctcct |
15724089 |
T |
|
| Q |
119 |
atgcaggaagaaaactcatcctgattgcaattgctgtactcatagttaatatcaataccatcaattatgtcatcgcaatggcacccgtctgtgctgct |
216 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
15724088 |
atgcaggaagaaaactcatccggattgcaattgctgtactcatagttaatatcaataccatcaattatgtcatcgcaatggcactcgtcggtgctgct |
15723991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0443 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0443
Description:
Target: scaffold0443; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 8933 - 8901
Alignment:
| Q |
155 |
tactcatagttaatatcaataccatcaattatg |
187 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
8933 |
tactcatagttaatatcaataccatcaattatg |
8901 |
T |
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Back To:
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