View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14389_low_6 (Length: 534)

Name: NF14389_low_6
Description: NF14389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14389_low_6
NF14389_low_6
[»] chr8 (17 HSPs)
chr8 (6-333)||(29585350-29585680)
chr8 (201-422)||(17477920-17478141)
chr8 (142-422)||(4427546-4427826)
chr8 (24-110)||(18324064-18324150)
chr8 (23-109)||(25149365-25149451)
chr8 (24-108)||(23976219-23976302)
chr8 (23-110)||(37543918-37544005)
chr8 (28-108)||(31253977-31254055)
chr8 (23-95)||(21184365-21184436)
chr8 (23-98)||(21124393-21124468)
chr8 (23-106)||(22426912-22426995)
chr8 (23-78)||(41358840-41358895)
chr8 (28-98)||(21124430-21124500)
chr8 (23-110)||(4289051-4289138)
chr8 (213-251)||(4441642-4441680)
chr8 (28-102)||(31254007-31254081)
chr8 (117-169)||(17477836-17477888)
[»] chr5 (13 HSPs)
chr5 (135-424)||(8340909-8341198)
chr5 (23-110)||(10760133-10760220)
chr5 (23-110)||(30100737-30100824)
chr5 (23-112)||(2555505-2555594)
chr5 (24-108)||(30852646-30852730)
chr5 (23-110)||(11298025-11298112)
chr5 (23-110)||(13753355-13753442)
chr5 (23-110)||(17497061-17497148)
chr5 (23-108)||(21943871-21943956)
chr5 (28-88)||(10760123-10760183)
chr5 (35-110)||(19491750-19491825)
chr5 (24-93)||(12895595-12895664)
chr5 (23-60)||(17497171-17497208)
[»] chr7 (16 HSPs)
chr7 (23-110)||(27508642-27508729)
chr7 (23-110)||(38761118-38761205)
chr7 (25-110)||(45012974-45013059)
chr7 (23-110)||(6441470-6441557)
chr7 (24-110)||(5080235-5080321)
chr7 (27-110)||(14197585-14197668)
chr7 (34-110)||(37787813-37787889)
chr7 (28-102)||(27508679-27508753)
chr7 (23-102)||(43257366-43257445)
chr7 (28-102)||(5080211-5080285)
chr7 (23-107)||(3404524-3404607)
chr7 (55-110)||(14197617-14197672)
chr7 (36-98)||(38761098-38761160)
chr7 (28-102)||(45012950-45013024)
chr7 (23-60)||(15272389-15272426)
chr7 (28-84)||(6441464-6441520)
[»] chr3 (18 HSPs)
chr3 (23-110)||(48755393-48755480)
chr3 (24-110)||(15031255-15031341)
chr3 (23-110)||(1426550-1426637)
chr3 (39-110)||(11989171-11989242)
chr3 (23-110)||(14434766-14434853)
chr3 (24-111)||(15005025-15005112)
chr3 (24-110)||(21514811-21514897)
chr3 (25-111)||(33343074-33343159)
chr3 (23-110)||(18445531-18445618)
chr3 (23-102)||(26498650-26498729)
chr3 (28-110)||(15031291-15031373)
chr3 (24-109)||(43562727-43562812)
chr3 (28-102)||(15031323-15031397)
chr3 (23-60)||(20759103-20759140)
chr3 (28-84)||(1426587-1426643)
chr3 (28-88)||(33343108-33343168)
chr3 (23-79)||(38498201-38498257)
chr3 (23-63)||(42453109-42453149)
[»] chr1 (7 HSPs)
chr1 (23-110)||(50335507-50335594)
chr1 (23-110)||(37608038-37608125)
chr1 (23-110)||(13735511-13735598)
chr1 (54-110)||(32374092-32374148)
chr1 (23-110)||(8097841-8097928)
chr1 (28-99)||(50335544-50335615)
chr1 (28-102)||(37608075-37608149)
[»] chr4 (30 HSPs)
chr4 (24-110)||(30470944-30471030)
chr4 (25-111)||(2634149-2634235)
chr4 (23-110)||(18830700-18830787)
chr4 (23-110)||(47943574-47943661)
chr4 (23-110)||(55382682-55382769)
chr4 (24-111)||(1387467-1387555)
chr4 (24-112)||(5448263-5448351)
chr4 (23-110)||(10380721-10380808)
chr4 (23-110)||(3370031-3370118)
chr4 (23-110)||(9826698-9826785)
chr4 (31-110)||(18836405-18836483)
chr4 (56-110)||(10757696-10757750)
chr4 (56-110)||(10970867-10970921)
chr4 (28-112)||(1387402-1387486)
chr4 (24-108)||(2063213-2063297)
chr4 (23-110)||(11821789-11821876)
chr4 (23-102)||(22017984-22018063)
chr4 (28-102)||(18830676-18830750)
chr4 (23-109)||(37695059-37695145)
chr4 (28-110)||(47144760-47144842)
chr4 (28-101)||(10757673-10757746)
chr4 (28-101)||(10970844-10970917)
chr4 (23-103)||(30378808-30378888)
chr4 (31-102)||(18500704-18500775)
chr4 (24-111)||(2232496-2232582)
chr4 (31-102)||(10380697-10380768)
chr4 (28-102)||(2634126-2634200)
chr4 (24-106)||(5324813-5324895)
chr4 (19-64)||(2634132-2634177)
chr4 (24-93)||(8951131-8951200)
[»] scaffold0003 (2 HSPs)
scaffold0003 (23-108)||(314144-314229)
scaffold0003 (28-102)||(314181-314255)
[»] chr6 (12 HSPs)
chr6 (23-112)||(25089218-25089307)
chr6 (23-110)||(13536626-13536714)
chr6 (23-110)||(19295407-19295494)
chr6 (23-110)||(21222591-21222678)
chr6 (23-93)||(10588014-10588084)
chr6 (28-110)||(10862084-10862166)
chr6 (23-112)||(10672742-10672830)
chr6 (28-108)||(26705099-26705179)
chr6 (28-102)||(19295383-19295457)
chr6 (54-108)||(26705093-26705147)
chr6 (60-112)||(19295437-19295489)
chr6 (28-102)||(21222567-21222641)
[»] scaffold0407 (6 HSPs)
scaffold0407 (28-111)||(960-1043)
scaffold0407 (28-111)||(7424-7507)
scaffold0407 (23-112)||(991-1080)
scaffold0407 (23-112)||(7455-7544)
scaffold0407 (28-102)||(937-1011)
scaffold0407 (28-102)||(7401-7475)
[»] chr2 (11 HSPs)
chr2 (23-110)||(39598633-39598720)
chr2 (35-110)||(8219217-8219292)
chr2 (24-111)||(31499475-31499562)
chr2 (24-110)||(22092927-22093013)
chr2 (24-93)||(32092870-32092939)
chr2 (35-110)||(24007006-24007081)
chr2 (24-106)||(31819981-31820063)
chr2 (60-112)||(32092883-32092935)
chr2 (28-99)||(31820017-31820088)
chr2 (28-99)||(39598612-39598683)
chr2 (23-60)||(24006946-24006983)
[»] scaffold0102 (1 HSPs)
scaffold0102 (23-111)||(23958-24046)
[»] scaffold0066 (1 HSPs)
scaffold0066 (24-108)||(15432-15516)
[»] scaffold0024 (1 HSPs)
scaffold0024 (23-110)||(127870-127957)
[»] scaffold0026 (1 HSPs)
scaffold0026 (24-110)||(57516-57602)
[»] scaffold0049 (1 HSPs)
scaffold0049 (54-102)||(59807-59855)
[»] scaffold0011 (2 HSPs)
scaffold0011 (42-106)||(190308-190372)
scaffold0011 (28-102)||(190280-190354)
[»] scaffold1300 (1 HSPs)
scaffold1300 (48-110)||(1441-1503)
[»] scaffold0039 (1 HSPs)
scaffold0039 (55-112)||(27613-27670)


Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 6 - 333
Target Start/End: Complemental strand, 29585680 - 29585350
Alignment:
Q  6 agtagcaaaggagtcgtcaaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgt 105  Q
    |||||| ||| | |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||  |||| |||||||| |||||||||||    
T  29585680 agtagctaagaaatcgtcaaaatagtccctgaatgtagactttgttattcaatttagtccctgaatgcagactttgttagtcaatttagtccctgaatgt 29585581  T
Q  106 agacttcctctaatcttagtttttctccgcaaagcttggacaaagtttgtgtcccaccttccttaagaaggttggaaattgccaatgagg---atgaagt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||    
T  29585580 agacttcctctaatcttagtttttctccgcaaagcttggacaaagtttgtgtcccaccttccttaagaaggttggaaattgccaatgaggatgatgaagt 29585481  T
Q  203 tggggtttaccttgaaataaatgcgcctgatcttgagtaccttaacattacccgaatcacatttggccaagatttcagcatgcacaacttacacaaagtc 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  29585480 tggggtttaccttgaaataaatgcgcctgatcttgagtaccttaacattacccgaatcacatttggccaggatttcagcatgtacaacttacacaaagtc 29585381  T
Q  303 gtggaagcgtatcttgatgtctttccccaat 333  Q
    |||||||||||||||||||||||||||||||    
T  29585380 gtggaagcgtatcttgatgtctttccccaat 29585350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 201 - 422
Target Start/End: Original strand, 17477920 - 17478141
Alignment:
Q  201 gttggggtttaccttgaaataaatgcgcctgatcttgagtaccttaacattacccgaatcacatttggccaagatttcagcatgcacaacttacacaaag 300  Q
    ||||||| |||||||||||||||||| ||  ||||||||||||||||||||||| |||||||||| ||||||| ||||| |||| | ||||| ||||| |    
T  17477920 gttggggcttaccttgaaataaatgcaccgaatcttgagtaccttaacattaccggaatcacattcggccaagttttcaccatgtataacttgcacaatg 17478019  T
Q  301 tcgtggaagcgtatcttgatgtctttccccaatcgtttggttctgtcatccctttacacaaccttctaggtgctctctctgggacaaaacatctggtgtt 400  Q
    | ||||||||||||||||||||||||||||||||| ||||||| ||| || |||||||||| || || ||||||||||||||||| |||||| | |||||    
T  17478020 tggtggaagcgtatcttgatgtctttccccaatcgcttggttccgtcgtcgctttacacaatctccttggtgctctctctgggactaaacatttagtgtt 17478119  T
Q  401 gaatcctttaacaaccaaggtt 422  Q
    || || || ||||||| |||||    
T  17478120 gagtcattcaacaacccaggtt 17478141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 142 - 422
Target Start/End: Complemental strand, 4427826 - 4427546
Alignment:
Q  142 tggacaaagtttgtgtcccaccttccttaagaaggttggaaattgccaatgaggatgaagttggggtttaccttgaaataaatgcgcctgatcttgagta 241  Q
    |||| |||||||| ||||||||||| || | |||||||  |||   || |||  |||||||||||| |||||||||||| || || || |||||||||||    
T  4427826 tggataaagtttgcgtcccaccttctttgaaaaggttgacaatcatcattgataatgaagttggggcttaccttgaaatgaaagcaccggatcttgagta 4427727  T
Q  242 ccttaacattacccgaatcacatttggccaagatttcagcatgcacaacttacacaaagtcgtggaagcgtatcttgatgtctttccccaatcgtttggt 341  Q
    |||| |||| | | |||||||||  ||| ||| ||| |||||| ||||||| ||||| || ||||||||  ||||| |||| |||| |||  |||||  |    
T  4427726 cctttacatcaacggaatcacatccggcgaagtttttagcatgtacaacttgcacaatgtggtggaagcacatcttaatgtttttctccagccgttttct 4427627  T
Q  342 tctgtcatccctttacacaaccttctaggtgctctctctgggacaaaacatctggtgttgaatcctttaacaaccaaggtt 422  Q
    || |||||||||||  ||||||| || ||   |||||||||||| |||||||| ||||||  || || |||||||||||||    
T  4427626 tccgtcatccctttgaacaacctccttggaaatctctctgggactaaacatctagtgttgggtcgttcaacaaccaaggtt 4427546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 18324064 - 18324150
Alignment:
Q  24 aaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||||||||||||||||||||| ||| |||||||||| || ||||||| ||||||||| |||||||| ||| | ||||||||||    
T  18324064 aaaatagtccctgaatgtagactttattagtcaatttagttcctgaatgcaaactccgttagtcaatttagtccttaaatgtagact 18324150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 25149451 - 25149365
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagac 109  Q
    ||||||| || ||||||||||||||||||| ||||||||||| | |||||||||||| |||| |||| ||| |||||||| ||||||    
T  25149451 caaaataatctctgaatgtagactttgttagtcaatttagtctctgaatgcagactctgttagtcaagttagtccctgaacgtagac 25149365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 23976302 - 23976219
Alignment:
Q  24 aaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtaga 108  Q
    |||||||||||||||||||| || ||||| ||||||||| ||| ||||||||||||||||  ||||||||  |||||||||||||    
T  23976302 aaaatagtccctgaatgtag-ctctgttagtcaatttagcccctgaatgcagactccgttggtcaatttagcccctgaatgtaga 23976219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 37544005 - 37543918
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||||||  ||| |||||||||||||| |||||||| |||| ||||||||| ||||||| | |||||| ||||||||| ||||||    
T  37544005 caaaatagtcattgattgtagactttgttagtcaatttaatccctgaatgcagattccgttagttaatttagtccctgaatatagact 37543918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 31253977 - 31254055
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtaga 108  Q
    |||||| ||||||||||||  |||| ||||||||||||| |||||||||||| |||| |||||||| ||||| ||||||||    
T  31253977 tagtccatgaatgtagact--gttagtcaatttagtccctgaatgcagactctgttagtcaatttagtccctaaatgtaga 31254055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 21184365 - 21184436
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaat 95  Q
    ||||||||||||||||| || ||||  ||| ||||||||||||| |||| |||||||||||||||||||||||    
T  21184365 caaaatagtccctgaatataaactta-ttagtcaatttagtccctgaatacagactccgttaatcaatttaat 21184436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 21124393 - 21124468
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccc 98  Q
    |||||||||| || |||||||||| | ||| ||||||||||||| ||||||||||| ||||| |||||||| ||||    
T  21124393 caaaatagtctctaaatgtagactctattagtcaatttagtccctgaatgcagacttcgttagtcaatttagtccc 21124468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 22426912 - 22426995
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgta 106  Q
    ||||||||||||||||||||| || ||||| ||||||||||||| ||||| || |||  ||| |||||||  ||||||||||||    
T  22426912 caaaatagtccctgaatgtagtctctgttagtcaatttagtccctgaatgtagtctcttttagtcaatttggtccctgaatgta 22426995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 41358895 - 41358840
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagact 78  Q
    |||||||||||||||||||||||| ||||| ||||||||||||  |||||||||||    
T  41358895 caaaatagtccctgaatgtagactctgttaatcaatttagtccatgaatgcagact 41358840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 21124430 - 21124500
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccc 98  Q
    ||||||||||||| |||||| |||| |||||||||||||| | || ||||||||||| |||||||| ||||    
T  21124430 tagtccctgaatgcagacttcgttagtcaatttagtcccctagtgtagactccgttagtcaatttagtccc 21124500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 4289138 - 4289051
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||||||  |||| | ||||| ||||| ||||||||||| |  ||||||||||  ||||||||||||| ||  ||||||||||||    
T  4289138 caaaatagtctttgaacgcagactatgttagtcaatttagtctctaaatgcagactatgttaatcaatttagtctttgaatgtagact 4289051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 4441642 - 4441680
Alignment:
Q  213 cttgaaataaatgcgcctgatcttgagtaccttaacatt 251  Q
    |||||||||||||| || |||||||||||||||||||||    
T  4441642 cttgaaataaatgcaccagatcttgagtaccttaacatt 4441680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 31254007 - 31254081
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaa 102  Q
    ||||||||||||| ||||| ||||| |||||||||||||  |||| ||| |  |||| ||| |||||||||||||    
T  31254007 tagtccctgaatgcagactctgttagtcaatttagtccctaaatgtagattttgttagtcactttaatccctgaa 31254081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 17477836 - 17477888
Alignment:
Q  117 aatcttagtttttctccgcaaagcttggacaaagtttgtgtcccaccttcctt 169  Q
    |||||| | ||||||||||||||||| |||||||||||  |||||||| ||||    
T  17477836 aatcttggcttttctccgcaaagcttagacaaagtttgcatcccacctccctt 17477888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 135 - 424
Target Start/End: Original strand, 8340909 - 8341198
Alignment:
Q  135 caaagcttggacaaagtttgtgtcccaccttccttaagaaggttggaaattgccaatgaggatgaagttggggtttaccttgaaataaatgcgcctgatc 234  Q
    ||||||||||| |||||||||||||| |||||||| | ||||||| ||||  ||| |||| |||| ||||| | |||| | ||| |||||||||| ||||    
T  8340909 caaagcttggataaagtttgtgtcccgccttccttgaaaaggttgaaaatcaccattgagaatgatgttggagcttacttggaagtaaatgcgccggatc 8341008  T
Q  235 ttgagtaccttaacattacccgaatcacatttggccaagatttcagcatgcacaacttacacaaagtcgtggaagcgtatcttgatgtctttccccaatc 334  Q
    || | |||||||||||||||| ||||||||| ||| ||| ||||||| || ||| ||| | ||| || |||||||||||||||||||||||||||   ||    
T  8341009 ttcaataccttaacattacccaaatcacattcggcgaaggtttcagcttgtacagcttgcccaacgtggtggaagcgtatcttgatgtctttcccacgtc 8341108  T
Q  335 gtttggttctgtcatccctttacacaaccttctaggtgctctctctgggacaaaacatctggtgttgaatcctttaacaaccaaggttaa 424  Q
    | |||||||  || | ||||| ||||||||  | || |||||||||||| ||||||||||  |||||| || || |||||||||||||||    
T  8341109 gcttggttccatcgtacctttgcacaacctctttggcgctctctctggggcaaaacatctcatgttgagtcgttcaacaaccaaggttaa 8341198  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 10760220 - 10760133
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||||||||| |||||||||| ||| | ||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||    
T  10760220 caaaatagtccctaaatgtagactctgtaagtcaatttagtccctgaatgcagactccgttagtcaatttagtccctgaatgtagact 10760133  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 30100824 - 30100737
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||||||| |||||| ||||| ||||| ||| ||||||||| ||||||||||||| ||| ||||| || ||||||||||||||||    
T  30100824 caaaatagtccatgaatgcagactctgttaatcactttagtccctgaatgcagactccattagtcaatatagtccctgaatgtagact 30100737  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 2555505 - 2555594
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagacttc 112  Q
    |||||||||| ||||||||||||| ||||| |||||||||||   ||||||||||| ||||| |||| ||| |||||||| |||||||||    
T  2555505 caaaatagtctctgaatgtagactctgttagtcaatttagtcgttgaatgcagacttcgttagtcaaattagtccctgaacgtagacttc 2555594  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 30852646 - 30852730
Alignment:
Q  24 aaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtaga 108  Q
    |||||||| |||||||||| ||| ||||| ||||||||||||| ||||||||||| ||| | |||||||| || |||||||||||    
T  30852646 aaaatagttcctgaatgtaaactctgttagtcaatttagtccctgaatgcagacttcgtaagtcaatttagtctctgaatgtaga 30852730  T

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Target: chr5; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 11298025 - 11298112
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||| ||||||||  |||||| ||||| ||||||||||| | ||||||||||||| ||| |||||||| | ||||||||||||||    
T  11298025 caaaataatccctgaacatagactctgttagtcaatttagtctctgaatgcagactccattagtcaatttagttcctgaatgtagact 11298112  T

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Target: chr5; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 13753442 - 13753355
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||||||||| |||||||||| ||| | ||||||||||||   |||||||||||||||| ||||||||  ||||||| |||||||    
T  13753442 caaaatagtccctaaatgtagactctgtaagtcaatttagtccttaaatgcagactccgttagtcaatttagcccctgaaagtagact 13753355  T

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Target: chr5; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 17497061 - 17497148
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||||||| ||||||||| || ||||| ||||||||||||  ||||||||| || |||| | |||||| ||||||||||||||||    
T  17497061 caaaatagtccgtgaatgtagtctctgttagtcaatttagtccttgaatgcagattctgttagttaatttagtccctgaatgtagact 17497148  T

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Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 21943956 - 21943871
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtaga 108  Q
    ||||||||| | |||||||||||| ||||| ||||||||||||| ||||||| |||  |||| |||||||| ||  ||||||||||    
T  21943956 caaaatagttcatgaatgtagactctgttaatcaatttagtccctgaatgcatactttgttagtcaatttagtctttgaatgtaga 21943871  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 10760183 - 10760123
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatca 88  Q
    ||||||||||||| |||||  |||| ||||||||||||| ||||| |||||||||||||||    
T  10760183 tagtccctgaatgcagactccgttagtcaatttagtccctgaatgtagactccgttaatca 10760123  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 19491750 - 19491825
Alignment:
Q  35 tgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    |||||||| ||| ||||| |||| |||||  | ||||||||||| |||||||||||||| ||||||||| ||||||    
T  19491750 tgaatgtatactatgttagtcaacttagtatctgaatgcagacttcgttaatcaatttagtccctgaatttagact 19491825  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 12895595 - 12895664
Alignment:
Q  24 aaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaattta 93  Q
    ||||||||| | ||||||||||||||||| |||||||| |||   ||||||||||| |||| ||||||||    
T  12895595 aaaatagtctccgaatgtagactttgttagtcaatttaatccttaaatgcagactctgttagtcaattta 12895664  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 17497208 - 17497171
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaattt 60  Q
    |||||||||||||||||||||||||||||  |||||||    
T  17497208 caaaatagtccctgaatgtagactttgttggtcaattt 17497171  T

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Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 27508642 - 27508729
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    |||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||| |||| |||||||| ||||||||||||||||    
T  27508642 caaaatagtccctgaatgtagactatgttagtcaatttagtccctgaatgcagactctgttagtcaatttagtccctgaatgtagact 27508729  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 38761205 - 38761118
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||| |||||||| |||||||||| |||||    
T  38761205 caaaatagtccctgaatgtagactttgttaatcaatttagtcctcgaatgcagactctgttagtcaatttagtccctgaatgcagact 38761118  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 45013059 - 45012974
Alignment:
Q  25 aaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||| |||||||||||| ||||||| ||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||    
T  45013059 aaatagttcctgaatgtagagtttgttagtcaatttagtccctgaatgcagactccgttagtcaatttaatctctgaatgtagact 45012974  T

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Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 6441557 - 6441470
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||| |||| |||||||| || || ||||||||||    
T  6441557 caaaataatccctgaatgtagactttgttagtcaatttagtccctgaatgcagactctgttagtcaatttagtctctaaatgtagact 6441470  T

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Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 5080321 - 5080235
Alignment:
Q  24 aaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||||| ||||||||| ||| | ||| ||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||    
T  5080321 aaaatagtctctgaatgtaaactatattagtcaatttagtccctgaatgcagactccgttaatcaatttagtacctgaatgtagact 5080235  T

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Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 14197668 - 14197585
Alignment:
Q  27 atagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    |||||||||||||||||||| ||||| |||||||| |||| ||||||||||||||||| |||||||| || || ||||||||||    
T  14197668 atagtccctgaatgtagactctgttagtcaatttaatccctgaatgcagactccgttagtcaatttagtctctcaatgtagact 14197585  T

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Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 37787889 - 37787813
Alignment:
Q  34 ctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||||||||||||||| ||||||||||||| ||||||| |||| |||| |||||||| ||  ||||||||||||    
T  37787889 ctgaatgtagactttgttagtcaatttagtccctgaatgcatactctgttagtcaatttagtcgttgaatgtagact 37787813  T

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Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 27508679 - 27508753
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaa 102  Q
    ||||||||||||| ||||| ||||| ||||||||||||| ||||| ||||||||||| ||| |||| ||| ||||    
T  27508679 tagtccctgaatgcagactctgttagtcaatttagtccctgaatgtagactccgttagtcactttagtccatgaa 27508753  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 43257445 - 43257366
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaa 102  Q
    ||||||| ||| ||||| |||||| ||||| |||||||||||||  |||| ||||| ||||| |||||||| ||||||||    
T  43257445 caaaataatccttgaatatagactctgttagtcaatttagtccctaaatgtagacttcgttagtcaatttactccctgaa 43257366  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 5080285 - 5080211
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaa 102  Q
    ||||||||||||| |||||  |||| |||||||||| || ||||| ||||||||||||||| |||| ||| ||||    
T  5080285 tagtccctgaatgcagactccgttaatcaatttagtacctgaatgtagactccgttaatcattttagtccttgaa 5080211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 3404524 - 3404607
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtag 107  Q
    |||| |||||| |||||||| ||| ||||| |||||||||||||  ||||||| ||| |||| |||||||| ||||||| |||||    
T  3404524 caaagtagtccatgaatgtacactctgttagtcaatttagtccctaaatgcag-ctctgttagtcaatttagtccctgagtgtag 3404607  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 14197672 - 14197617
Alignment:
Q  55 caatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    |||| ||||||| ||||| |||||| |||| ||||||||||||||||||| |||||    
T  14197672 caatatagtccctgaatgtagactctgttagtcaatttaatccctgaatgcagact 14197617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 38761160 - 38761098
Alignment:
Q  36 gaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccc 98  Q
    ||||| ||||| ||||| ||||||||||||| |||||||||||| |||| ||| |||| ||||    
T  38761160 gaatgcagactctgttagtcaatttagtccctgaatgcagactctgttagtcactttagtccc 38761098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 45013024 - 45012950
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaa 102  Q
    ||||||||||||| |||||  |||| |||||||| || | ||||| |||||||| |||||| |||| ||||||||    
T  45013024 tagtccctgaatgcagactccgttagtcaatttaatctctgaatgtagactccgctaatcactttagtccctgaa 45012950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 15272389 - 15272426
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaattt 60  Q
    |||||||||||||||||||||||||||||  |||||||    
T  15272389 caaaatagtccctgaatgtagactttgttggtcaattt 15272426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 6441520 - 6441464
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgtta 84  Q
    ||||||||||||| ||||| ||||| ||||||||||| |  |||| |||||||||||    
T  6441520 tagtccctgaatgcagactctgttagtcaatttagtctctaaatgtagactccgtta 6441464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 48755393 - 48755480
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    |||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| |||||||| ||| ||||||||||||    
T  48755393 caaaatagtccctgaatgtagactctgttagtcaatttagtccctgaatgcagactccgttagtcaatttagtccatgaatgtagact 48755480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 15031255 - 15031341
Alignment:
Q  24 aaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||||||| ||||||||| |||||||| || |||||||||||||    
T  15031255 aaaatagtccctgaatgtagactctgttagtcaatttagtccctgaatgcaaactccgttagtcaatttagtcactgaatgtagact 15031341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 1426550 - 1426637
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||||| |||||||||||| | ||||| ||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||    
T  1426550 caaaatagttcctgaatgtagattatgttagtcaatttagtccctgaatgcagactccgttagtcaatttagtccctaaatgtagact 1426637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 11989242 - 11989171
Alignment:
Q  39 tgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    |||||||| ||||| ||||| ||||||| |||||||||||||||||||||||||| ||| | ||||||||||    
T  11989242 tgtagactctgttagtcaatctagtccctgaatgcagactccgttaatcaatttagtccttaaatgtagact 11989171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 14434853 - 14434766
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||||||| |||||||||||| ||||| ||||||||||||| ||||||| |||| | || | |||||| || |||||||||||||    
T  14434853 caaaatagtccatgaatgtagactctgttagtcaatttagtccctgaatgcaaactcagatagttaatttagtctctgaatgtagact 14434766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 15005025 - 15005112
Alignment:
Q  24 aaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagactt 111  Q
    |||||||||| |||||||||||| ||||| |||||||| |||| |||||||||||| |||| | |||||| ||| |||||||| ||||    
T  15005025 aaaatagtccttgaatgtagactctgttagtcaatttaatccctgaatgcagactcagttagttaatttagtccttgaatgtatactt 15005112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 21514811 - 21514897
Alignment:
Q  24 aaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    |||||||||| |||||||||||| ||||| | ||||||||||| |||||| |||| ||||| |||||||| ||| ||||||| ||||    
T  21514811 aaaatagtccttgaatgtagactctgttagttaatttagtccctgaatgcggacttcgttagtcaatttagtccttgaatgtggact 21514897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 33343074 - 33343159
Alignment:
Q  25 aaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagactt 111  Q
    |||| ||||||||||||||||| ||||| |||||| |||||| ||||||| |||  |||| |||||||| |||||||||||||||||    
T  33343074 aaatggtccctgaatgtagactatgttagtcaatt-agtccctgaatgcaaactatgttagtcaatttagtccctgaatgtagactt 33343159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 18445618 - 18445531
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    |||||||||  ||||||||| ||| ||||| |||| |||||  | ||||||||||| ||||||||||||||||||| |||| ||||||    
T  18445618 caaaatagtttctgaatgtatactatgttagtcaacttagtatctgaatgcagacttcgttaatcaatttaatcccagaatttagact 18445531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 26498729 - 26498650
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaa 102  Q
    ||||||||||| ||||||||||||  |||| ||||||||||| | ||||||| ||||||||| ||| |||| ||||||||    
T  26498729 caaaatagtccatgaatgtagactcggttagtcaatttagtcactgaatgcatactccgttagtcactttagtccctgaa 26498650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 15031291 - 15031373
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||||||||| | |||  |||| ||||||||||| | ||||| ||||||||||| |||||||| || |||||||||||||    
T  15031291 tagtccctgaatgcaaactccgttagtcaatttagtcactgaatgtagactccgttagtcaatttagtcactgaatgtagact 15031373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 43562812 - 43562727
Alignment:
Q  24 aaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagac 109  Q
    |||||||||| |||||||||| | ||||  |||||||| ||   ||||||||||| | ||| ||||||||||||||||||||||||    
T  43562812 aaaatagtccttgaatgtagattctgtttgtcaatttaatcgttgaatgcagacttcattagtcaatttaatccctgaatgtagac 43562727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 15031323 - 15031397
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaa 102  Q
    ||||| |||||||||||||  |||| ||||||||||| | ||||| ||||||||||| ||| |||| ||||||||    
T  15031323 tagtcactgaatgtagactccgttagtcaatttagtcactgaatgtagactccgttagtcactttagtccctgaa 15031397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 20759140 - 20759103
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaattt 60  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  20759140 caaaatagtccttgaatgtagactttgttagtcaattt 20759103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 1426587 - 1426643
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgtta 84  Q
    ||||||||||||| |||||  |||| |||||||||||||  |||| |||||||||||    
T  1426587 tagtccctgaatgcagactccgttagtcaatttagtccctaaatgtagactccgtta 1426643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 33343108 - 33343168
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatca 88  Q
    ||||||||||||| | ||| ||||| ||||||||||||| ||||| |||||  ||||||||    
T  33343108 tagtccctgaatgcaaactatgttagtcaatttagtccctgaatgtagactttgttaatca 33343168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 38498201 - 38498257
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactc 79  Q
    ||||||||||| | ||| || ||||||||| ||||||||||||| ||||| ||||||    
T  38498201 caaaatagtccataaatataaactttgttagtcaatttagtccctgaatgtagactc 38498257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 42453109 - 42453149
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagt 63  Q
    ||||||||||||| |||||||||| ||||| ||||||||||    
T  42453109 caaaatagtccctaaatgtagactctgttagtcaatttagt 42453149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 50335507 - 50335594
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||  |||||||| ||||||||||||||||    
T  50335507 caaaatagtccatgaatgtagactttgttagtcaatttagtccctgaatgcagactccgttcgtcaatttagtccctgaatgtagact 50335594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 37608038 - 37608125
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||||||| |||||||||||| ||||| ||||||||||||  |||||||||||| |||| |||||||| ||| ||||||||||||    
T  37608038 caaaatagtccttgaatgtagactctgttagtcaatttagtccttgaatgcagactctgttagtcaatttagtccttgaatgtagact 37608125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 13735511 - 13735598
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||||||||  |||||||||| ||||| ||||||||||| | ||||||||||||||||| |||||||| ||  | ||||||||||    
T  13735511 caaaatagtcccacaatgtagactctgttagtcaatttagtctctgaatgcagactccgttagtcaatttagtcaataaatgtagact 13735598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 32374148 - 32374092
Alignment:
Q  54 tcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||||||||| ||||||| |||| |||| |||||||| ||||||||||||||||    
T  32374148 tcaatttagtccctgaatgcaaactctgttagtcaatttagtccctgaatgtagact 32374092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 8097928 - 8097841
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||||||| ||||| |||| | ||||| ||||||||||||  |||| || ||||| ||| |||||||| | ||||||||||||||    
T  8097928 caaaatagtccatgaatatagattctgttagtcaatttagtccttgaatacatactccattagtcaatttagttcctgaatgtagact 8097841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 50335544 - 50335615
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccct 99  Q
    ||||||||||||| |||||  |||  ||||||||||||| ||||| |||||||| |||||| |||| |||||    
T  50335544 tagtccctgaatgcagactccgttcgtcaatttagtccctgaatgtagactccgctaatcactttagtccct 50335615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 37608075 - 37608149
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaa 102  Q
    |||||| |||||| ||||| ||||| ||||||||||||  ||||| ||||||||||| ||| |||  ||||||||    
T  37608075 tagtccttgaatgcagactctgttagtcaatttagtccttgaatgtagactccgttagtcactttggtccctgaa 37608149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 30471030 - 30470944
Alignment:
Q  24 aaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||| ||  ||||||||||||    
T  30471030 aaaatagtccctgaatgtagactatgttaatcaatttagtccctgaatgcagactccgttaatcaatttagtcattgaatgtagact 30470944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 2634235 - 2634149
Alignment:
Q  25 aaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagactt 111  Q
    |||||||| ||||||||||||| ||||| ||||||||||||| |||||||||||| |||  |||||||| |||||||||||||||||    
T  2634235 aaatagtctctgaatgtagactctgttagtcaatttagtccctgaatgcagactctgttcgtcaatttagtccctgaatgtagactt 2634149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 18830787 - 18830700
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||||||| |||||||||| | ||||| || |||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||    
T  18830787 caaaatagtccttgaatgtagattctgttagtccatttagtccctgaatgcagacttcgttagtcaatttagtccctgaatgtagact 18830700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 47943661 - 47943574
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||||||||||||||||||||| |||| |||||||||| |  ||||||||   |||||| |||||||||||||||||||||||||    
T  47943661 caaaatagtccctgaatgtagacttggttagtcaatttagttcttgaatgcaggaaccgttagtcaatttaatccctgaatgtagact 47943574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 55382769 - 55382682
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    |||||||||| ||||||||||||||||||| ||||||| |||||  |||||||| ||||||| |||||||| |||||| |||||||||    
T  55382769 caaaatagtctctgaatgtagactttgttagtcaattttgtccctaaatgcagattccgttagtcaatttagtccctggatgtagact 55382682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 24 - 111
Target Start/End: Complemental strand, 1387555 - 1387467
Alignment:
Q  24 aaaatagtccctgaatgtagactttgttactcaatttagtcccc-gaatgcagactccgttaatcaatttaatccctgaatgtagactt 111  Q
    |||||| |||||||||||||| ||||||  |||||||||||||| |||||||||||| |||| |||||||| || ||||||||||||||    
T  1387555 aaaatattccctgaatgtagattttgttcatcaatttagtcccctgaatgcagactctgttagtcaatttagtcgctgaatgtagactt 1387467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 5448263 - 5448351
Alignment:
Q  24 aaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagacttc 112  Q
    ||||||| ||||||||||| ||| ||||| ||||||||||||| | ||||||||||||||  |||||||| ||||||||| ||||||||    
T  5448263 aaaatagcccctgaatgtaaactctgttagtcaatttagtccctggatgcagactccgttggtcaatttagtccctgaatatagacttc 5448351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 10380808 - 10380721
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    |||||||||| || |||||||||| ||||| |||||||| |||| ||||||||||| ||||| |||||||| ||||| ||||||||||    
T  10380808 caaaatagtctctaaatgtagactctgttagtcaatttaatccctgaatgcagacttcgttagtcaatttagtccctaaatgtagact 10380721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 3370031 - 3370118
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||||||  | |||||||||| ||||| ||||||||||||| ||||||||||| ||||| |||||||| || || ||||||||||    
T  3370031 caaaatagtcattaaatgtagactctgttagtcaatttagtccctgaatgcagacttcgttagtcaatttagtctcttaatgtagact 3370118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 9826698 - 9826785
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    |||||||||  ||||||||| ||| ||||| |||| |||||  | ||||||||||| |||||||||||||||||||||||| ||||||    
T  9826698 caaaatagtttctgaatgtatactatgttagtcaacttagtatctgaatgcagacttcgttaatcaatttaatccctgaatttagact 9826785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 18836483 - 18836405
Alignment:
Q  31 tccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    |||||||| ||||||| ||||| || |||||||||| ||||||||||||||||| || ||||| ||||||||||||||||    
T  18836483 tccctgaacgtagactctgttagtccatttagtccctgaatgcagactccgttagtc-atttagtccctgaatgtagact 18836405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 10757750 - 10757696
Alignment:
Q  56 aatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||    
T  10757750 aatttagtccctgaatgcagactccgttagtcaatttagtccctgaatgtagact 10757696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 10970921 - 10970867
Alignment:
Q  56 aatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||    
T  10970921 aatttagtccctgaatgcagactccgttagtcaatttagtccctgaatgtagact 10970867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 28 - 112
Target Start/End: Complemental strand, 1387486 - 1387402
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagacttc 112  Q
    ||||| ||||||||||||||||||| ||| |||||| || ||||||| || |||||| |||||||| | || |||||||||||||    
T  1387486 tagtcgctgaatgtagactttgttagtcactttagttcctgaatgcaaaccccgttagtcaatttagttccggaatgtagacttc 1387402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 2063213 - 2063297
Alignment:
Q  24 aaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtaga 108  Q
    |||||||||  |||||||| ||| ||||| ||||||||||| | ||||||| ||||||||| |||||||| ||||| ||||||||    
T  2063213 aaaatagtcattgaatgtaaactatgttagtcaatttagtctctgaatgcaaactccgttagtcaatttagtccctaaatgtaga 2063297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 11821789 - 11821876
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||||||  |||||||||||| ||||| | ||||||||||| ||||||||| | ||||| |||||||| ||  ||||||||||||    
T  11821789 caaaatagtctttgaatgtagactctgttagttaatttagtccctgaatgcagatttcgttagtcaatttagtctatgaatgtagact 11821876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 22018063 - 22017984
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaa 102  Q
    |||||||||||||||||||||||| ||||| || |||||||| | ||||| | ||||||||||||| |||| ||| ||||    
T  22018063 caaaatagtccctgaatgtagactatgttagtctatttagtctctgaatgtatactccgttaatcactttagtccttgaa 22017984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 18830750 - 18830676
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaa 102  Q
    ||||||||||||| |||||| |||| ||||||||||||| ||||| ||||||| ||| ||| |||| ||||||||    
T  18830750 tagtccctgaatgcagacttcgttagtcaatttagtccctgaatgtagactccattagtcactttagtccctgaa 18830676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 37695145 - 37695059
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagac 109  Q
    ||||||| || ||||||||||||| ||||| |||||||| ||   |||||||||||| |||| |||||||||||||| |||| ||||    
T  37695145 caaaataatctctgaatgtagactctgttagtcaatttaatcgttgaatgcagactctgttagtcaatttaatccctaaatgcagac 37695059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 47144760 - 47144842
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    |||| ||||||||||||||  |||| ||||||||||||  ||||  |||||||||||||||||||| | |||||||| |||||    
T  47144760 tagttcctgaatgtagactcagttagtcaatttagtccttgaataaagactccgttaatcaatttagttcctgaatgcagact 47144842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 10757746 - 10757673
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctga 101  Q
    ||||||||||||| |||||  |||| ||||||||||||| ||||| |||||| |||||||| | ||||||||||    
T  10757746 tagtccctgaatgcagactccgttagtcaatttagtccctgaatgtagactctgttaatcactataatccctga 10757673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 10970917 - 10970844
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctga 101  Q
    ||||||||||||| |||||  |||| ||||||||||||| ||||| |||||| |||||||| | ||||||||||    
T  10970917 tagtccctgaatgcagactccgttagtcaatttagtccctgaatgtagactctgttaatcactataatccctga 10970844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 30378808 - 30378888
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaat 103  Q
    |||||||||| ||||||| ||||| ||||| |||||| |||| | |||||||||||| |||| |||||| | |||||||||    
T  30378808 caaaatagtctctgaatgcagactctgttagtcaattcagtctctgaatgcagactctgttagtcaattcagtccctgaat 30378888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 18500704 - 18500775
Alignment:
Q  31 tccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaa 102  Q
    |||||||||||||||| ||||| ||||||||||||| ||||  |||||| |||||||| |||| || |||||    
T  18500704 tccctgaatgtagactctgttagtcaatttagtccctgaatttagactctgttaatcactttagtctctgaa 18500775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 111
Target Start/End: Complemental strand, 2232582 - 2232496
Alignment:
Q  24 aaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagactt 111  Q
    |||||||||| | |||||||||| ||||| |||||||| |||| |  || |||||| ||||  ||||||| |||||||||||||||||    
T  2232582 aaaatagtccttcaatgtagactatgttagtcaatttaatccctggttg-agactctgttagccaatttagtccctgaatgtagactt 2232496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 10380768 - 10380697
Alignment:
Q  31 tccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaa 102  Q
    |||||||||| |||||| |||| |||||||||||||  |||| |||||| |||| ||| |||| ||||||||    
T  10380768 tccctgaatgcagacttcgttagtcaatttagtccctaaatgtagactcagttagtcactttagtccctgaa 10380697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 2634200 - 2634126
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaa 102  Q
    ||||||||||||| ||||| ||||  ||||||||||||| ||||| |||||  |||||||| |||| || |||||    
T  2634200 tagtccctgaatgcagactctgttcgtcaatttagtccctgaatgtagactttgttaatcactttagtcgctgaa 2634126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 5324895 - 5324813
Alignment:
Q  24 aaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgta 106  Q
    ||||||||  |||| || ||||| ||||| |||||||||| |  |||||||||||| |||| |||||||| ||| ||||||||    
T  5324895 aaaatagtttctgattgcagactctgttagtcaatttagttcatgaatgcagactctgttagtcaatttagtccttgaatgta 5324813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 2634177 - 2634132
Alignment:
Q  19 tcgtcaaaatagtccctgaatgtagactttgttactcaatttagtc 64  Q
    |||||||  ||||||||||||||||||||||||| ||| |||||||    
T  2634177 tcgtcaatttagtccctgaatgtagactttgttaatcactttagtc 2634132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 8951200 - 8951131
Alignment:
Q  24 aaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaattta 93  Q
    |||||||| |||||||||||| ||||||| |||||||||| ||  |||| ||||| ||||| ||| ||||    
T  8951200 aaaatagttcctgaatgtagattttgttagtcaatttagttccttaatgtagacttcgttagtcatttta 8951131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 314144 - 314229
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtaga 108  Q
    ||||||||||||| |||||||||| ||||| ||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||    
T  314144 caaaatagtccctaaatgtagactctgttagtcaatttagtccctgaatgcagactccgttagtcaatttagtccctgaatgtaga 314229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 314181 - 314255
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaa 102  Q
    ||||||||||||| |||||  |||| ||||||||||||| ||||| ||| || |||| ||| |||| ||||||||    
T  314181 tagtccctgaatgcagactccgttagtcaatttagtccctgaatgtagagtctgttagtcactttagtccctgaa 314255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 25089218 - 25089307
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagacttc 112  Q
    |||||||||||||||||||||||| ||||| |||||||||||   ||||||||||||| ||| |||||||| ||||||||||||||||||    
T  25089218 caaaatagtccctgaatgtagactctgttagtcaatttagtcattgaatgcagactccattagtcaatttagtccctgaatgtagacttc 25089307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 13536626 - 13536714
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaattta-atccctgaatgtagact 110  Q
    |||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||   |||||||||||||||    
T  13536626 caaaatagtccctgaatgtagactctgttagtcaatttagtccctgaatgcagactccgttagtcaatttagccccctgaatgtagact 13536714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 19295494 - 19295407
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||| ||||||||||| | ||| |||||||| ||||||||||||||||    
T  19295494 caaaatagtccctgaatgcagactctgttagtcaatttagtccctgaatgcagacttcattagtcaatttagtccctgaatgtagact 19295407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 21222678 - 21222591
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    |||||||||| ||||||||| ||| ||||| |||| |||||| | ||||||||||| ||||| |||||||| ||||||||||||||||    
T  21222678 caaaatagtctctgaatgtatactatgttagtcaacttagtctctgaatgcagacttcgttagtcaatttagtccctgaatgtagact 21222591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 10588084 - 10588014
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaattta 93  Q
    ||||||||||| |||||||||||||| ||| ||||||||||||  ||||||||||||||||| ||||||||    
T  10588084 caaaatagtccatgaatgtagactttattagtcaatttagtccttgaatgcagactccgttagtcaattta 10588014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 10862084 - 10862166
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||||||||||||||| ||||| |||||| | |||| ||| ||||||||||||| |||||||| ||||||||| ||||||    
T  10862084 tagtccctgaatgtagactctgttagtcaattcaatccctgaaggcagactccgttagtcaatttagtccctgaatatagact 10862166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 10672830 - 10672742
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagacttc 112  Q
    ||||||||| |||||||||||| ||||||| ||||||||||| | ||||||| | | ||||| |||||||| ||||||||||||||||||    
T  10672830 caaaatagttcctgaatgtaga-tttgttaatcaatttagtctctgaatgcatatttcgttagtcaatttagtccctgaatgtagacttc 10672742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 26705099 - 26705179
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtaga 108  Q
    ||||||||||||| ||| || |||| ||||||||||||| ||||  ||| ||||||| |||||||| ||||||||||||||    
T  26705099 tagtccctgaatgcagatttcgttaatcaatttagtccctgaatatagaatccgttagtcaatttagtccctgaatgtaga 26705179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 19295457 - 19295383
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaa 102  Q
    ||||||||||||| ||||||  ||| ||||||||||||| ||||| ||||||||||  ||| |||| ||||||||    
T  19295457 tagtccctgaatgcagacttcattagtcaatttagtccctgaatgtagactccgttggtcactttagtccctgaa 19295383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 26705093 - 26705147
Alignment:
Q  54 tcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtaga 108  Q
    ||||||||||||| ||||||||| | |||||||||||||| ||||||||| ||||    
T  26705093 tcaatttagtccctgaatgcagatttcgttaatcaatttagtccctgaatataga 26705147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 19295489 - 19295437
Alignment:
Q  60 tagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagacttc 112  Q
    ||||||| |||||||||||| |||| |||||||| |||||||||| |||||||    
T  19295489 tagtccctgaatgcagactctgttagtcaatttagtccctgaatgcagacttc 19295437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 21222641 - 21222567
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaa 102  Q
    ||||| ||||||| |||||| |||| ||||||||||||| ||||| |||||| |||| |||  ||||||| ||||    
T  21222641 tagtctctgaatgcagacttcgttagtcaatttagtccctgaatgtagactcagttagtcacattaatccttgaa 21222567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407 (Bit Score: 56; Significance: 6e-23; HSPs: 6)
Name: scaffold0407
Description:

Target: scaffold0407; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 1043 - 960
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagactt 111  Q
    ||||||||||||| ||| || |||| ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||    
T  1043 tagtccctgaatgcagatttcgttagtcaatttagtccctgaatgcagacttcgttagtcaatttaatccctgaatgtagactt 960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 7507 - 7424
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagactt 111  Q
    ||||||||||||| ||| || |||| ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||    
T  7507 tagtccctgaatgcagatttcgttagtcaatttagtccctgaatgcagacttcgttagtcaatttaatccctgaatgtagactt 7424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 1080 - 991
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagacttc 112  Q
    |||||||||||||||| ||||||||| ||| ||||||||||||| ||||||||| | ||||| |||||||| |||||||||| |||||||    
T  1080 caaaatagtccctgaacgtagactttattattcaatttagtccctgaatgcagatttcgttagtcaatttagtccctgaatgcagacttc 991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 7544 - 7455
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagacttc 112  Q
    |||||||||||||||| ||||||||| ||| ||||||||||||| ||||||||| | ||||| |||||||| |||||||||| |||||||    
T  7544 caaaatagtccctgaacgtagactttattattcaatttagtccctgaatgcagatttcgttagtcaatttagtccctgaatgcagacttc 7455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 1011 - 937
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaa 102  Q
    ||||||||||||| |||||| |||| |||||||| |||| ||||| |||||  |||| ||| |||| ||||||||    
T  1011 tagtccctgaatgcagacttcgttagtcaatttaatccctgaatgtagactttgttagtcactttagtccctgaa 937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 7475 - 7401
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaa 102  Q
    ||||||||||||| |||||| |||| |||||||| |||| ||||| |||||  |||| ||| |||| ||||||||    
T  7475 tagtccctgaatgcagacttcgttagtcaatttaatccctgaatgtagactttgttagtcactttagtccctgaa 7401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 39598720 - 39598633
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    |||||||||||||||||||||||||||||  ||||||||||| | ||||| | ||||||||| |||||||| ||||||||||||||||    
T  39598720 caaaatagtccctgaatgtagactttgttggtcaatttagtcgctgaatgtatactccgttagtcaatttagtccctgaatgtagact 39598633  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 8219217 - 8219292
Alignment:
Q  35 tgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    |||||||||||| ||||| ||||||||||  | ||||||||||||||||| |||||||||||||||||||| ||||    
T  8219217 tgaatgtagactctgttagtcaatttagtttctgaatgcagactccgttagtcaatttaatccctgaatgtggact 8219292  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 111
Target Start/End: Complemental strand, 31499562 - 31499475
Alignment:
Q  24 aaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagactt 111  Q
    ||||||||||||||||||||| | ||||| ||| ||||||  | ||||||||||||||||| |||||||| ||| |||||||||||||    
T  31499562 aaaatagtccctgaatgtagaatctgttagtcattttagtttctgaatgcagactccgttagtcaatttagtccttgaatgtagactt 31499475  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 22092927 - 22093013
Alignment:
Q  24 aaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||||||||||||||||||| ||||| ||| |||||| || ||||||||||||| ||  |||||||| ||||||||| ||||||    
T  22092927 aaaatagtccctgaatgtagactctgttagtcagtttagttcctgaatgcagactccattcgtcaatttagtccctgaatatagact 22093013  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 32092939 - 32092870
Alignment:
Q  24 aaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaattta 93  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||||| ||||| ||||| ||| ||||    
T  32092939 aaaatagtccctgaatgtagactctgttagtcaatttagtccctgaatgtagacttcgttagtcacttta 32092870  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 24007081 - 24007006
Alignment:
Q  35 tgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    |||||||||||| ||||| ||||||||||||  ||||||||| |||||| |||||| || | ||||||||||||||    
T  24007081 tgaatgtagactctgttagtcaatttagtccatgaatgcagattccgttgatcaatgtagtacctgaatgtagact 24007006  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 31819981 - 31820063
Alignment:
Q  24 aaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgta 106  Q
    ||||||||| ||||||||||||| ||||| || |||||||||  |||||||||||   ||| |||||||| || |||||||||    
T  31819981 aaaatagtcactgaatgtagactctgttagtccatttagtccttgaatgcagactttcttagtcaatttagtctctgaatgta 31820063  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 32092935 - 32092883
Alignment:
Q  60 tagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagacttc 112  Q
    ||||||| ||||| |||||| |||| |||||||| ||||||||||||||||||    
T  32092935 tagtccctgaatgtagactctgttagtcaatttagtccctgaatgtagacttc 32092883  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 31820017 - 31820088
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccct 99  Q
    |||||| |||||| ||||||| ||| ||||||||||| | ||||| | ||||||||||||| |||| |||||    
T  31820017 tagtccttgaatgcagactttcttagtcaatttagtctctgaatgtatactccgttaatcactttagtccct 31820088  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 39598683 - 39598612
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccct 99  Q
    ||||| ||||||||| |||  |||| ||||||||||||| ||||| ||||||||||| ||| |||| |||||    
T  39598683 tagtcgctgaatgtatactccgttagtcaatttagtccctgaatgtagactccgttagtcactttagtccct 39598612  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 24006946 - 24006983
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaattt 60  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  24006946 caaaacagtccctgaatgtagactctgttactcaattt 24006983  T

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Target: scaffold0102 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 23958 - 24046
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagactt 111  Q
    |||||| ||||| |||||||||||  |||| ||||||||||||| |||||||||||| |||  |||||||| ||| |||||||||||||    
T  23958 caaaatggtccccgaatgtagactacgttagtcaatttagtccctgaatgcagactctgttggtcaatttagtccttgaatgtagactt 24046  T

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Target: scaffold0066 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 15432 - 15516
Alignment:
Q  24 aaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtaga 108  Q
    ||||||||| ||||||||||||| ||||| |||||||| || | ||||| |||||||||||  ||||||| || |||||||||||    
T  15432 aaaatagtctctgaatgtagactctgttagtcaatttaatctctgaatgtagactccgttagccaatttagtctctgaatgtaga 15516  T

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Target: scaffold0024 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 127870 - 127957
Alignment:
Q  23 caaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    |||||||||  ||||||||| ||| ||||| |||| |||||  | ||||||||||| ||||||||||||||||||| |||| ||||||    
T  127870 caaaatagtttctgaatgtatactatgttagtcaacttagtatctgaatgcagacttcgttaatcaatttaatcccagaatttagact 127957  T

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Target: scaffold0026 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 57516 - 57602
Alignment:
Q  24 aaaatagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||||||  ||||||||| ||| ||||| |||| |||||  | ||||||||||| |||||||||||||| ||||||||| ||||||    
T  57516 aaaatagtttctgaatgtatactatgttagtcaacttagtatctgaatgcagacttcgttaatcaatttagtccctgaatttagact 57602  T

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Target: scaffold0049 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 59855 - 59807
Alignment:
Q  54 tcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaa 102  Q
    ||||||||||||| ||||||||||||||||| |||||||| ||||||||    
T  59855 tcaatttagtccctgaatgcagactccgttagtcaatttagtccctgaa 59807  T

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Target: scaffold0011 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 190372 - 190308
Alignment:
Q  42 agactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgta 106  Q
    ||||||||||| |||||||||| || |||| ||||||| |||| |||||||| ||||| ||||||    
T  190372 agactttgttagtcaatttagttcctgaatacagactctgttagtcaatttagtccctaaatgta 190308  T

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Target: scaffold0011; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 190354 - 190280
Alignment:
Q  28 tagtccctgaatgtagactttgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaa 102  Q
    |||| |||||||  ||||| ||||| |||||||||||||  |||| | |||  ||||||||||||||||||||||    
T  190354 tagttcctgaatacagactctgttagtcaatttagtccctaaatgtaaactatgttaatcaatttaatccctgaa 190280  T

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Target: scaffold1300 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1300
Description:

Target: scaffold1300; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 1441 - 1503
Alignment:
Q  48 tgttactcaatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagact 110  Q
    ||||| |||| |||||| | ||||||||||| ||||| | |||||| ||||||||||||||||    
T  1441 tgttaatcaacttagtctctgaatgcagacttcgttagttaatttagtccctgaatgtagact 1503  T

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Target: scaffold0039 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 27670 - 27613
Alignment:
Q  55 caatttagtccccgaatgcagactccgttaatcaatttaatccctgaatgtagacttc 112  Q
    |||||||||||| |||| || || |||||| |||||||| | ||||||||||||||||    
T  27670 caatttagtccctgaatacataccccgttagtcaatttacttcctgaatgtagacttc 27613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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