View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14389_low_7 (Length: 466)
Name: NF14389_low_7
Description: NF14389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14389_low_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 9 - 466
Target Start/End: Original strand, 34408512 - 34408969
Alignment:
| Q |
9 |
tcgaagaatataattataatcaagtccgaagcatacgtttctcccgtataattgttactaactgtaataactaactaaatgtagttgaccgagtgatgtt |
108 |
Q |
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| T |
34408512 |
tcgaataatataattataactaagtccgaagcataagtttctcccgtataattgttactaactgtaataactaactaaatgtagttgaccgagtgatgtt |
34408611 |
T |
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| Q |
109 |
tagcgaaaaagtagatcgtgttatcacttgtggattaataaagttctatttatagtaatgctcaacctccatataatctccacactttgtggtaacttat |
208 |
Q |
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| T |
34408612 |
tagcgaaaaagtagatcgtgttatcacttgtggattaataaagttctatttatagtaatgctcaacctccatataatctccacactttgtggtaacttat |
34408711 |
T |
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| Q |
209 |
gacagtacttatggataaattgtaattacaaaagaaaagacacaccagaacacaagctagctactagacctttgaataagttgtaattggttacataaca |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34408712 |
gacagtacttatggataaattgtaattacaaaagaaaagacacaccagaacacaagctagctactagacctttgaataagttgtaattggttacatcaca |
34408811 |
T |
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| Q |
309 |
ttgttgcattgcaatgatagattgattgggaacatgtcgtcgtcagatgatgttgcagcaagacagaaggccatcgttgattggcttaccgtcactgcct |
408 |
Q |
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|||||||||||||| |||| |||||| || |||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||| |
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| T |
34408812 |
ttgttgcattgcaaagatatattgatcggaaacatgtcatcgtcagatgatgttgcagcaaggcagaaggccatcgatgattggcttcccgtcactgcct |
34408911 |
T |
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| Q |
409 |
cgtgtacagccaaatggtggtactctgcttttcaccatatcacggccatggttggcgc |
466 |
Q |
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| T |
34408912 |
cgaggaaagccaaatggtggtactctgcttttcacaatatcacggccatggttggcgc |
34408969 |
T |
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