View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14389_low_8 (Length: 461)
Name: NF14389_low_8
Description: NF14389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14389_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 22 - 450
Target Start/End: Complemental strand, 29289243 - 29288815
Alignment:
| Q |
22 |
ctcgcaagactatacgctgtgatagcaaaaagactttcaattagtgaacaatctgaagatgtagcaagtttatgtgatacggcagttgcagctcttggga |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29289243 |
ctcgcaagactatacgctgtgatagcaaaaagactttcaattagtgaacaatctgaagatgtagcaagtttatgtgatacggcagttgcagctcttggga |
29289144 |
T |
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| Q |
122 |
aactttgtgaatatcatcgtgacagtattgatggccctacggtaatatactaatatcttcctcagaaaaagaaagcagtattttcaaattttaatgccta |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29289143 |
aactttgtgaatatcatcgtgacagtattgatggccctacggtaatatactaatatcttcctcagaaaaagaaagcagtattttcaaattttaatgccta |
29289044 |
T |
|
| Q |
222 |
ttttcattgtcttaaagatttctatatatagcttttgtacattgagtgtttagtgcatatagatatgcagcagggtctactatcttcaaggaaaactcta |
321 |
Q |
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| T |
29289043 |
ttttcattgtcttcaagatttctatatatagcttttgtaaattgagtgtttagtgcatatagatatgcagcagggtctactatcttcaaggaaaactcta |
29288944 |
T |
|
| Q |
322 |
agttacataggtgaatgcatattatatagatacttacagaaattaatgttgttgttgacagtatatattggttagatggaccctgaaatcttactgtcaa |
421 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29288943 |
agttacataggtgaatacatattatatagatacttacagaaattaatgttgttgttgacagtatatattggttagatggaccctgaaatcttactgtcaa |
29288844 |
T |
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| Q |
422 |
gggcagctgttattggacatattcttgga |
450 |
Q |
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| T |
29288843 |
gggcagctgttattggacattttattgga |
29288815 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 42285549 - 42285606
Alignment:
| Q |
91 |
ttatgtgatacggcagttgcagctcttgggaaactttgtgaatatcatcgtgacagta |
148 |
Q |
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| T |
42285549 |
ttatgtgataccgcagttgcagctcttggaagaatctgtgaatttcaccgtgacagta |
42285606 |
T |
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