View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1438_high_4 (Length: 442)
Name: NF1438_high_4
Description: NF1438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1438_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 33536733 - 33536310
Alignment:
| Q |
1 |
tgtaaaggttcaagcatcaatggtgacccaatttcaagacatgagcttcaacaagctttttcaccatcctctgatggtggtgaaattcgagaccaattga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33536733 |
tgtaaaggttcaagcatcaatggtgacccaatttcaagacatgagcttcaacaagctttttcaccatcctctgatggtggtgaaattcgagaccaattga |
33536634 |
T |
|
| Q |
101 |
atcagttaagcttaactagagatcctgaagctggaataagaagactagctagggtttcgtcgcagtttcttccaccggatggttcgaggattgcgaaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33536633 |
atcagttaagcttaactagagatcctgaagctggaataagaagactagctagggtttcgtcgcagtttcttccaccggatggttcgaggattgcgaaggt |
33536534 |
T |
|
| Q |
201 |
tgattcggagaagtatgaattacggtattcttatctttctcagcgcggttattatcctgatgctcttgataaagcgaatcaagatagtttttgtattcac |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33536533 |
tgattcggagaagtatgaattacggtattcgtatctttctcagcgcggttattatcctgatgctcttgataaagcgaatcaagatagtttttgtattcac |
33536434 |
T |
|
| Q |
301 |
acgccgtttggaacggatgtgaatgatcattttttcggtgtttttgatggtcatggtgaatttggggcggagtgttcacagtttgtgaagcgtaggcttt |
400 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33536433 |
acgccatttggaacggatgtgaatgatcattttttcggtgtttttgatggtcatggtgaatttggggcggagtgttcacagtttgtgaagcgtaggcttt |
33536334 |
T |
|
| Q |
401 |
gtgagaatttgttaaggaattcta |
424 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
33536333 |
gtgagaatttgttaaggaattcta |
33536310 |
T |
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