View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1438_high_6 (Length: 352)
Name: NF1438_high_6
Description: NF1438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1438_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 10 - 337
Target Start/End: Original strand, 12325818 - 12326145
Alignment:
| Q |
10 |
attattctccttacaaatacaaggcaacacaaatgatgaataattaatctgtttctggacctgtcttgacttgatcaacttgatccatatccacaatttt |
109 |
Q |
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| T |
12325818 |
attattctccttacaaatacaaggcaacacaaatgatgaataattaatctgtttctggacctgtcttgactttatcaacttgatccatatccacaatttt |
12325917 |
T |
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| Q |
110 |
gcaataaattggatcttttctctaatcactcttttctctctctcaatgaatgcttcttcaaagctttccatcacatattagtttcacctctgaatttaaa |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
12325918 |
gcaataaattggatcttttctctaatcactcttttctctctctcaatgaatgcttcttcaaagttttccatcacatattagtttcacctctgaatctaaa |
12326017 |
T |
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| Q |
210 |
cataaattccaaggttttgttctatatccttctatactagatcttcgagcttctctagtaataaaaataataaagagaataactaaacaatcaaatgtaa |
309 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12326018 |
cataaattccaaggttttattctatatccttctatactagatcttcgagcttctctagtaataaaaataataaagagaataactaaacaatcaaatgtaa |
12326117 |
T |
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| Q |
310 |
aagagcttaggaatttttattactatct |
337 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
12326118 |
aagagcttaggaatttttattactatct |
12326145 |
T |
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