View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1438_high_8 (Length: 324)
Name: NF1438_high_8
Description: NF1438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1438_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 7 - 308
Target Start/End: Original strand, 5828805 - 5829106
Alignment:
| Q |
7 |
gagatgaacaataaaagaagacacaataaccaaagagaagaaccaaccgtctaatagagagaggaactaataaagaggagcaaccaaaaaattcaaatac |
106 |
Q |
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| T |
5828805 |
gagaagaacaataaaagaagacacaataaccaaagagaagaaccaactgtctaatagagagaggaactaataaagaggagcaacaaaaaaattcaaatac |
5828904 |
T |
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| Q |
107 |
atcgtcaataaagacttttcacaaacacattatcaacaataacttgactcaccaaattatccaaaaaatacaccttaatagagttcttcacaaatcttct |
206 |
Q |
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| T |
5828905 |
atcatcaataaagacttttcacaaacacattatcaacaataacttgactcaccaaattatccaaaaaatacaccttaatagagttcttcacaaatcttct |
5829004 |
T |
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| Q |
207 |
aaatttacaacccataagcaaactcatgaaattcgtggaaaaacaccctgaagcaaaacccttcatatgattcttacacaaacgccaccaacaagatcca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5829005 |
aaatttacaacccataagcaaactcatgaaattcgtggaagaacaccctgaagcaaaacccttcatatgattcttacacaaacgccaccaacaagatcca |
5829104 |
T |
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| Q |
307 |
ac |
308 |
Q |
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|| |
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| T |
5829105 |
ac |
5829106 |
T |
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