View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1438_low_1 (Length: 616)
Name: NF1438_low_1
Description: NF1438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1438_low_1 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 537; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 25 - 616
Target Start/End: Original strand, 48395768 - 48396356
Alignment:
| Q |
25 |
actgctagcatttgtgttatcaattggactaaacttatagaaacaggtttgtgtgtgtatatgcatcaatgatgtgatgcaatggacaaatgttttgagt |
124 |
Q |
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| T |
48395768 |
actgctagcatttgtgttatcaattggactaaacttatagaaacaggtttgtg--tgtatatgcatcaatgatgtgatgtaatggacaaatgttttgagt |
48395865 |
T |
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| Q |
125 |
tgattgaaattctaggttgtattttaaacaatagaatttgaacatccaacattgttatttctttctcattcaaaaacaatggtagattaagtcagttatc |
224 |
Q |
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| T |
48395866 |
tgattgaaattctaggttgtattttaaacaatagaatttgaacattcaacattgttatttctttctcattcaaaaacaatggtagattaagtcagttatc |
48395965 |
T |
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| Q |
225 |
ggaagtatagtacattggattaagtttcatagtaatgagtaatcatcacttgagaggcggaattttacattggatccacttcaaggttggtacagaagac |
324 |
Q |
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| T |
48395966 |
ggaagactagtacattggattaagtttcatagtaatgagtaatcatcacttgagaggcggaattttacattggatccacttcaaggttggtacagaagac |
48396065 |
T |
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| Q |
325 |
ctaagagtcctgaatacataatttaataatcatatgtaaaaaatattgctaacatagcctgttaaggccttttactttcactatatagaaccactcccaa |
424 |
Q |
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| T |
48396066 |
ctaagagtcctgaatacataatttaataatcatatgt-aaaaatattgctaacatagcctgttaaggccttttactttcactatatagaaccactcccaa |
48396164 |
T |
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| Q |
425 |
caatcatgattcatgtaaagaaccgatgtctctgagataattttgacagaccaaagaaacaaaaggaacaaagccatacagtttcatagtaatgagtaag |
524 |
Q |
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| T |
48396165 |
caatcatgattcatgtaaagaaccgatgtctctgagataattttgacagaccaaagaaacaaaaggaacaaatacatgaagtttcatagtaatgagtaag |
48396264 |
T |
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| Q |
525 |
aatcatcacttgagataacttgaatcaggttccatgtgtctgagatgaacaccttgcggaataagggagtatctgatattgagctcttcaaa |
616 |
Q |
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| T |
48396265 |
aatcatcacttgagataacttgaatcaggttccatgtgtctgagatgaacaccttgcggaataaggtagtatctgatattgagctcttcaaa |
48396356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 471 - 616
Target Start/End: Complemental strand, 48385870 - 48385725
Alignment:
| Q |
471 |
cagaccaaagaaacaaaaggaacaaagccatacagtttcatagtaatgagtaagaatcatcacttgagataacttgaatcaggttccatgtgtctgagat |
570 |
Q |
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| T |
48385870 |
cagaccaaagaaacaaaaggagcacatacatgcagttgcatagcagtgagaaagaatcatcatttgagataacttgcatcaggttccatgtgtctgagat |
48385771 |
T |
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| Q |
571 |
gaacaccttgcggaataagggagtatctgatattgagctcttcaaa |
616 |
Q |
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| T |
48385770 |
gaacaccttgtggaagaaggttgtatcttatattgagatcttcaaa |
48385725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 527 - 616
Target Start/End: Complemental strand, 48366284 - 48366195
Alignment:
| Q |
527 |
tcatcacttgagataacttgaatcaggttccatgtgtctgagatgaacaccttgcggaataagggagtatctgatattgagctcttcaaa |
616 |
Q |
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| T |
48366284 |
tcatcatttgagagaacttgtgtcaggttctatgtgtctgagatgaacaccttgtggaagaaggctgtatctgatattgagctcttcaaa |
48366195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 504 - 590
Target Start/End: Original strand, 33618649 - 33618735
Alignment:
| Q |
504 |
agtttcatagtaatgagtaagaatcatcacttgagataacttgaatcaggttccatgtgtctgagatgaacaccttgcggaataagg |
590 |
Q |
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| T |
33618649 |
agtttcatagtcgcgagtaagaatcatcatttgagtaaacttgtattaggttccatgtgtctaagatgaacaccttgtggaataagg |
33618735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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