View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1438_low_12 (Length: 277)
Name: NF1438_low_12
Description: NF1438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1438_low_12 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 7 - 277
Target Start/End: Complemental strand, 43636665 - 43636394
Alignment:
| Q |
7 |
cctcttagtttaa-caaatgaaggaaagtcgattaaaatatttaaattggtcaaaattttaatctctaaaattttcaacagcctcatcccaaaatacttc |
105 |
Q |
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| T |
43636665 |
cctcttagtttaaacaaatgaaggaaagtcgattaaaatatttaaattggttaaaattttaatctctaaaattttcaacagcctcatcccaaaatacttc |
43636566 |
T |
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| Q |
106 |
aaagttttgtcaaaatatttgagcaaagattttatataacaagatattgaattatgatgatataaaaccatatcctatagtttctttttcctttcatcnn |
205 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43636565 |
aaagttttgtcaaaatatttgagcaaagtttttatataacaagatattgaattatgatgatataaaaccatatcctatagtttctttttcctttcatcaa |
43636466 |
T |
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| Q |
206 |
nnnnngtttcttgttccaaaaatataataatcaacttcacctaaaaggaaggaagcaatgttttgacatatt |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43636465 |
aaaaagtttcttgttccaaaaatataataatcaacttcacctaaaaggaaggaagcaatgttttgacatatt |
43636394 |
T |
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