View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1438_low_13 (Length: 251)

Name: NF1438_low_13
Description: NF1438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1438_low_13
NF1438_low_13
[»] chr7 (7 HSPs)
chr7 (19-147)||(14739005-14739133)
chr7 (152-251)||(14738492-14738591)
chr7 (133-251)||(19780702-19780820)
chr7 (25-223)||(19886367-19886565)
chr7 (35-127)||(19781180-19781275)
chr7 (70-163)||(19723614-19723704)
chr7 (217-251)||(19723535-19723569)
[»] chr5 (3 HSPs)
chr5 (5-139)||(17587064-17587198)
chr5 (181-251)||(17588119-17588189)
chr5 (156-185)||(17587199-17587228)
[»] chr3 (2 HSPs)
chr3 (70-251)||(32577580-32577761)
chr3 (70-129)||(12733565-12733624)
[»] chr2 (1 HSPs)
chr2 (63-163)||(18912342-18912442)


Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 14739133 - 14739005
Alignment:
Q  19 tgcaaagaatgcatatttctcaaaagtggagcaacattcttttttgaaaagaataataaagaaattagcttgaaccttgatgcctaaaagctagtaccat 118  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  14739133 tgcaaagaatgcatatttctcaaaagtgcagcaacattcttttttgaaaagaataataaagaaattagcttgaaactttatgcctaaaagctagtaccat 14739034  T
Q  119 aagtgacacaattgttatgatattaaaaa 147  Q
    |||||||||||||||||||||||||||||    
T  14739033 aagtgacacaattgttatgatattaaaaa 14739005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 152 - 251
Target Start/End: Complemental strand, 14738591 - 14738492
Alignment:
Q  152 attctactacaacttcattaacaagtacaaaaatgaaatagtcattgtttccaaacttagttctgatatacttgaattggtataaacaaaactaaaccaa 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14738591 attctactacaacttcattaacaagtacaaaaatgaaatagtcattgtttccaaacctagttctgatatacttgaattggtataaacaaaactaaaccaa 14738492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 133 - 251
Target Start/End: Complemental strand, 19780820 - 19780702
Alignment:
Q  133 ttatgatattaaaaattagattctactacaacttcattaacaagtacaaaaatgaaatagtcattgtttccaaacttagttctgatatacttgaattggt 232  Q
    ||||||||||||||| |||||| ||||||||  |||||| |||||||||||||| ||||  ||||||||||||| ||||||  |||| ||||||| | ||    
T  19780820 ttatgatattaaaaaatagattatactacaatatcattatcaagtacaaaaatgtaataaccattgtttccaaaattagtttggataaacttgaactagt 19780721  T
Q  233 ataaacaaaactaaaccaa 251  Q
    |||||||||||||||||||    
T  19780720 ataaacaaaactaaaccaa 19780702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 19886367 - 19886565
Alignment:
Q  25 gaatgcatatttctcaaaagtggagcaacattcttttttgaaaagaataataaagaaattagcttgaaccttgatgcctaaaagctagtaccataagtga 124  Q
    ||||||||| | |||||||||| ||| ||||||  || |||||| ||||| | |||||| ||||| ||  ||||||||||||||| | ||||| | ||||    
T  19886367 gaatgcataatcctcaaaagtgaagccacattccattgtgaaaaaaataagagagaaatcagcttcaagtttgatgcctaaaagccaataccacaggtga 19886466  T
Q  125 cacaattgttatgatattaaaaattagattctactacaacttcattaacaagtacaaaaatgaaatagtcattgtttccaaacttagttctgatatact 223  Q
    ||  |  |||||||||| ||||  ||||||  |||||||  |||||| ||||||||||||| ||| | |||| || | |||| ||||||  ||||||||    
T  19886467 caagacagttatgatataaaaaggtagatttgactacaatatcattatcaagtacaaaaataaaaaaatcatcgtgttcaaaattagtttggatatact 19886565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 127
Target Start/End: Complemental strand, 19781275 - 19781180
Alignment:
Q  35 ttctcaaaagtggagcaacattcttttttgaaaagaataataa---agaaattagcttgaaccttgatgcctaaaagctagtaccataagtgacac 127  Q
    |||||||||||| ||| |||||| ||| |||||| ||||||||   |||||||||||| |||| |||| ||||||| |||||||||||| ||||||    
T  19781275 ttctcaaaagtgaagccacattcctttctgaaaaaaataataataaagaaattagcttcaaccgtgattcctaaaaactagtaccataactgacac 19781180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 70 - 163
Target Start/End: Complemental strand, 19723704 - 19723614
Alignment:
Q  70 aataataaagaaattagcttgaaccttgatgcctaaaagctagtaccataagtgacacaattgttatgatattaaaaattagattctactacaa 163  Q
    ||||||||||| |||||||| ||||||||||||||||| |||| || ||||||||||| |  ||| |||   ||||||||||||| ||||||||    
T  19723704 aataataaagagattagcttcaaccttgatgcctaaaatctagcacaataagtgacacgacggttgtga---taaaaattagattttactacaa 19723614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 19723569 - 19723535
Alignment:
Q  217 atatacttgaattggtataaacaaaactaaaccaa 251  Q
    ||||||||||| |||||||||||||||||||||||    
T  19723569 atatacttgaactggtataaacaaaactaaaccaa 19723535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 5 - 139
Target Start/End: Original strand, 17587064 - 17587198
Alignment:
Q  5 atgtcgaagaatattgcaaagaatgcatatttctcaaaagtggagcaacattcttttttgaaaagaataataaagaaattagcttgaaccttgatgccta 104  Q
    |||| |||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  17587064 atgtagaagaaaaatgcaaagaatgcatatttctcaaaagtgcagcaacattcttttttgaaaagagtaataaagaaattagcttgaaacttgatgccta 17587163  T
Q  105 aaagctagtaccataagtgacacaattgttatgat 139  Q
    |||||||||||||||||||||||||||||||||||    
T  17587164 aaagctagtaccataagtgacacaattgttatgat 17587198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 17588119 - 17588189
Alignment:
Q  181 aaaatgaaatagtcattgtttccaaacttagttctgatatacttgaattggtataaacaaaactaaaccaa 251  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||    
T  17588119 aaaatgaaatagtcattgtttccaaacttagttctcatatacttaaattggtataaacaaaacaaaaccaa 17588189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 185
Target Start/End: Original strand, 17587199 - 17587228
Alignment:
Q  156 tactacaacttcattaacaagtacaaaaat 185  Q
    ||||||||||||||||||||||||||||||    
T  17587199 tactacaacttcattaacaagtacaaaaat 17587228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 70 - 251
Target Start/End: Original strand, 32577580 - 32577761
Alignment:
Q  70 aataataaagaaattagcttgaaccttgatgcctaaaagctagtaccataagtgacacaattgttatgatattaaaaattagattctactacaacttcat 169  Q
    |||||||||||||||||||  |||| |||| |||||| ||||||||||||| ||||||||   ||||||||||||||| |||||| ||||||||  ||||    
T  32577580 aataataaagaaattagctccaaccatgattcctaaatgctagtaccataactgacacaacgcttatgatattaaaaaatagattatactacaatatcat 32577679  T
Q  170 taacaagtacaaaaatgaaatagtcattgtttccaaacttagttctgatatacttgaattggtataaacaaaactaaaccaa 251  Q
    || |||||||||||||| ||||  |||||| |||||| ||||||  |||| ||||||| | |||||||||||||||||||||    
T  32577680 tatcaagtacaaaaatgtaataaccattgtctccaaagttagtttggataaacttgaactagtataaacaaaactaaaccaa 32577761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 12733565 - 12733624
Alignment:
Q  70 aataataaagaaattagcttgaaccttgatgcctaaaagctagtaccataagtgacacaa 129  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12733565 aataataaacaaattagcttcaaccttgatgcctaaaagctagtaccataagtgacacaa 12733624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 163
Target Start/End: Original strand, 18912342 - 18912442
Alignment:
Q  63 tgaaaagaataataaagaaattagcttgaaccttgatgcctaaaagctagtaccataagtgacacaattgttatgatattaaaaattagattctactaca 162  Q
    |||||| ||||||| |||||||||||| ||||| ||||||||||||| | | ||| | ||||||| |  |||||||||||| |  |||||||||||||||    
T  18912342 tgaaaataataatagagaaattagcttcaacctcgatgcctaaaagccaatgccacaggtgacaccacggttatgatattatagtttagattctactaca 18912441  T
Q  163 a 163  Q
    |    
T  18912442 a 18912442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University