View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1438_low_14 (Length: 240)

Name: NF1438_low_14
Description: NF1438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1438_low_14
NF1438_low_14
[»] scaffold0391 (1 HSPs)
scaffold0391 (1-240)||(12115-12354)
[»] chr8 (12 HSPs)
chr8 (132-240)||(33992214-33992322)
chr8 (132-240)||(33952695-33952803)
chr8 (132-240)||(33975301-33975409)
chr8 (132-240)||(33960001-33960109)
chr8 (1-71)||(33952524-33952594)
chr8 (154-227)||(33913545-33913618)
chr8 (1-60)||(33959824-33959883)
chr8 (1-60)||(33975124-33975183)
chr8 (1-60)||(33992044-33992103)
chr8 (1-63)||(33941930-33941992)
chr8 (154-233)||(33942275-33942353)
chr8 (1-59)||(33913191-33913249)
[»] chr7 (3 HSPs)
chr7 (132-240)||(8277953-8278061)
chr7 (132-238)||(2891508-2891614)
chr7 (23-71)||(2891693-2891741)


Alignment Details
Target: scaffold0391 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 12115 - 12354
Alignment:
Q  1 atggacatcatcaacaaattaggctccatgaatctggctaatgtcataatagcaaggtacaatgacaattaaattttcttctaggctaacttagatcctt 100  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12115 atggaaatcataaacaaattaggctccatgaatctggctaatgtcataatagcaaggtacaatgacaattatattttcttctaggctaacttagatcctt 12214  T
Q  101 aaatacataacaagaatgatattaactcagaaattaacctctgctcatatactaggaaaaatgcaagtgatgcagacaattacaactacaataaccactt 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12215 aaatatataacaagaatgatattaactcagaaattaacctctgctcatatactaggaaaaatgcaagtgatgcagacaattacaactacaataaccactt 12314  T
Q  201 catcatccttcatgatcttctaagagatcttggaatttac 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12315 catcatccttcatgatcttctaagagatcttggaatttac 12354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 132 - 240
Target Start/End: Original strand, 33992214 - 33992322
Alignment:
Q  132 aattaacctctgctcatatactaggaaaaatgcaagtgatgcagacaattacaactacaataaccacttcatcatccttcatgatcttctaagagatctt 231  Q
    ||||||||||| ||||| ||| |||||||||||||||||  |||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  33992214 aattaacctcttctcatttaccaggaaaaatgcaagtgacacagacaataacaactacaataatcacttcatcatccttcatgatattctaagagatctt 33992313  T
Q  232 ggaatttac 240  Q
    |||||||||    
T  33992314 ggaatttac 33992322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 132 - 240
Target Start/End: Original strand, 33952695 - 33952803
Alignment:
Q  132 aattaacctctgctcatatactaggaaaaatgcaagtgatgcagacaattacaactacaataaccacttcatcatccttcatgatcttctaagagatctt 231  Q
    ||||||||||||||||| ||| |||||||||||||||||  | |||||| ||||||||||||| ||||||||||||||||||||| |||||||||| |||    
T  33952695 aattaacctctgctcatttaccaggaaaaatgcaagtgacacggacaataacaactacaataatcacttcatcatccttcatgatattctaagagaactt 33952794  T
Q  232 ggaatttac 240  Q
    |||||||||    
T  33952795 ggaatttac 33952803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 132 - 240
Target Start/End: Original strand, 33975301 - 33975409
Alignment:
Q  132 aattaacctctgctcatatactaggaaaaatgcaagtgatgcagacaattacaactacaataaccacttcatcatccttcatgatcttctaagagatctt 231  Q
    ||||||||||||||||| ||| |||||||||||||||||  | |||||| ||||||||||||| ||||||||||||||||||||| |||||||||| |||    
T  33975301 aattaacctctgctcatttaccaggaaaaatgcaagtgacacggacaataacaactacaataatcacttcatcatccttcatgatattctaagagaactt 33975400  T
Q  232 ggaatttac 240  Q
    |||||||||    
T  33975401 ggaatttac 33975409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 132 - 240
Target Start/End: Original strand, 33960001 - 33960109
Alignment:
Q  132 aattaacctctgctcatatactaggaaaaatgcaagtgatgcagacaattacaactacaataaccacttcatcatccttcatgatcttctaagagatctt 231  Q
    ||||||||||||||||| ||| |||||||||||||||||  | ||| || ||||||||||||| ||||||||||||||||||||| |||||||||| |||    
T  33960001 aattaacctctgctcatttaccaggaaaaatgcaagtgacacggacgataacaactacaataatcacttcatcatccttcatgatattctaagagaactt 33960100  T
Q  232 ggaatttac 240  Q
    |||||||||    
T  33960101 ggaatttac 33960109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 33952524 - 33952594
Alignment:
Q  1 atggacatcatcaacaaattaggctccatgaatctggctaatgtcataatagcaaggtacaatgacaatta 71  Q
    ||||| ||||||||||||||||||  ||||||| ||||||||||||||||| |||||||| ||||| ||||    
T  33952524 atggaaatcatcaacaaattaggcatcatgaatttggctaatgtcataataccaaggtactatgactatta 33952594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 33913545 - 33913618
Alignment:
Q  154 aggaaaaatgcaagtgatgcagacaattacaactacaataaccacttcatcatccttcatgatcttctaagaga 227  Q
    |||||||||||||||||  |||| | |||| ||||||||| |||||||||  ||||||||||||||||||||||    
T  33913545 aggaaaaatgcaagtgacacagaaagttactactacaatagccacttcatattccttcatgatcttctaagaga 33913618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 33959824 - 33959883
Alignment:
Q  1 atggacatcatcaacaaattaggctccatgaatctggctaatgtcataatagcaaggtac 60  Q
    ||||| ||||||||||||||||||  ||||||| ||||||||||||||||| ||||||||    
T  33959824 atggaaatcatcaacaaattaggcatcatgaatttggctaatgtcataataccaaggtac 33959883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 33975124 - 33975183
Alignment:
Q  1 atggacatcatcaacaaattaggctccatgaatctggctaatgtcataatagcaaggtac 60  Q
    ||||| ||||||||||||||||||  ||||||| ||||||||||||||||| ||||||||    
T  33975124 atggaaatcatcaacaaattaggcatcatgaatttggctaatgtcataataccaaggtac 33975183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 33992044 - 33992103
Alignment:
Q  1 atggacatcatcaacaaattaggctccatgaatctggctaatgtcataatagcaaggtac 60  Q
    ||||| ||||||||||||||||||  ||||||| ||||||||||||||||| ||||||||    
T  33992044 atggaaatcatcaacaaattaggcatcatgaatttggctaatgtcataataccaaggtac 33992103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 33941930 - 33941992
Alignment:
Q  1 atggacatcatcaacaaattaggctccatgaatctggctaatgtcataatagcaaggtacaat 63  Q
    |||||||| ||||||||||||| ||| |||||| ||||||||||| ||||||| |||||||||    
T  33941930 atggacataatcaacaaattagactctatgaatttggctaatgtcttaatagctaggtacaat 33941992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 233
Target Start/End: Original strand, 33942275 - 33942353
Alignment:
Q  154 aggaaaaatgcaagtgatgcagacaattacaactacaataaccacttcatcatccttcatgatcttctaagagatcttgg 233  Q
    |||||||||||||||||  |||| |||||| |||||| ||| ||||||||| ||||||||||||| || ||||| |||||    
T  33942275 aggaaaaatgcaagtgacacagaaaattactactaca-taatcacttcatcgtccttcatgatctgctgagagagcttgg 33942353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 33913191 - 33913249
Alignment:
Q  1 atggacatcatcaacaaattaggctccatgaatctggctaatgtcataatagcaaggta 59  Q
    |||| ||||||||||||||||| ||| |||||||||||||| |||  ||||||||||||    
T  33913191 atggccatcatcaacaaattagactctatgaatctggctaaggtctcaatagcaaggta 33913249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 132 - 240
Target Start/End: Complemental strand, 8278061 - 8277953
Alignment:
Q  132 aattaacctctgctcatatactaggaaaaatgcaagtgatgcagacaattacaactacaataaccacttcatcatccttcatgatcttctaagagatctt 231  Q
    ||||||||||||||||| |||  | |||| || ||||||  | |||||| ||||||||||||| ||||||||||||||||||||| |||||||||| |||    
T  8278061 aattaacctctgctcatttacctgaaaaagtgaaagtgacacggacaataacaactacaataatcacttcatcatccttcatgatattctaagagaactt 8277962  T
Q  232 ggaatttac 240  Q
    |||||||||    
T  8277961 ggaatttac 8277953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 238
Target Start/End: Complemental strand, 2891614 - 2891508
Alignment:
Q  132 aattaacctctgctcatatactaggaaaaatgcaagtgatgcagacaattacaactacaataaccacttcatcatccttcatgatcttctaagagatctt 231  Q
    ||||| ||| ||||||| ||| || ||||||||||||||  || ||||||||||||| |||| ||||||||||||| ||||| ||||||||  ||| |||    
T  2891614 aattaccctttgctcatttaccagaaaaaatgcaagtgacacatacaattacaactataatagccacttcatcatctttcataatcttctactagagctt 2891515  T
Q  232 ggaattt 238  Q
    |||||||    
T  2891514 ggaattt 2891508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 2891741 - 2891693
Alignment:
Q  23 gctccatgaatctggctaatgtcataatagcaaggtacaatgacaatta 71  Q
    |||||||||||||||  | |||| |||||||||||||||||||| ||||    
T  2891741 gctccatgaatctggaaattgtcttaatagcaaggtacaatgactatta 2891693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University