View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1438_low_16 (Length: 232)
Name: NF1438_low_16
Description: NF1438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1438_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 14737969 - 14738105
Alignment:
| Q |
17 |
acacatatcttaaacttgaacaaatttattatctatctatagatttacacatatatgagaaaaggaggataaaaaacatgtactcttcaaacagatattg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
14737969 |
acacatatcttaaacttgaacaaatttattatctatctatagatttacacatatatgagaaaaggaagataaaaaacatgtactcttcaaacagatattg |
14738068 |
T |
|
| Q |
117 |
atttcattcactacaaaactttgttatagataatgaa |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14738069 |
atttcattcactacaaaactttgttatagataatgaa |
14738105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 14738139 - 14738184
Alignment:
| Q |
187 |
ataaacgttcaaattggctgagtgtatttttgtgagtccacctcat |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14738139 |
ataaacgttcaaattggctgagtgtatttttgtgagtccacctcat |
14738184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 19722744 - 19722799
Alignment:
| Q |
97 |
tactcttcaaacagatattgatttcattcactacaaaactttgttatagataatga |
152 |
Q |
| |
|
|||||||||||| ||||| || |||||| ||| |||||||||||||| |||||||| |
|
|
| T |
19722744 |
tactcttcaaactgatatcgaattcatttacttcaaaactttgttattgataatga |
19722799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 17588727 - 17588591
Alignment:
| Q |
17 |
acacatatcttaaacttgaacaaatttattatctatctatagatttacacatatatgagaaaaggaggataaaaaacatgtactcttcaaacagatattg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||| |
|
|
| T |
17588727 |
acacatatcttaaacttgaacaaatttattatctatctatagatttacacatatatgagaaaaggaagataaaaaacatatactcttcaaacatatattg |
17588628 |
T |
|
| Q |
117 |
atttcattcactacaaaactttgttatagataatgaa |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17588627 |
atttcattcactacaaaactttgttatagataatgaa |
17588591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 17588570 - 17588525
Alignment:
| Q |
187 |
ataaacgttcaaattggctgagtgtatttttgtgagtccacctcat |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17588570 |
ataaacgttcaaattggctgagtgtatttttgtgagtccacctcat |
17588525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 14750068 - 14750121
Alignment:
| Q |
99 |
ctcttcaaacagatattgatttcattcactacaaaactttgttatagataatga |
152 |
Q |
| |
|
||||| |||| |||||| |||||||| | | ||||||||||||||||||||||| |
|
|
| T |
14750068 |
ctctttaaactgatattaatttcatttaattcaaaactttgttatagataatga |
14750121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University