View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1438_low_2 (Length: 506)
Name: NF1438_low_2
Description: NF1438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1438_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 86 - 497
Target Start/End: Original strand, 39690820 - 39691231
Alignment:
| Q |
86 |
gtgtcttaaccatataataatcgagagtttggctaaaaagcaagtaaaatttagtcgatgattgtttccgtcagaatatgaattcagatcgatctcctga |
185 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39690820 |
gtgtcttaaccatataataatggagagtttggctaaaaagcaagtaaaatttagtcgatgattgtttccgtcagaatatgaattcagatcgatctcctga |
39690919 |
T |
|
| Q |
186 |
actatttgttgctcaatgagctcattcttgagctcaatcacttgatatcaaaagcatgtcaatattatttaaatggttatannnnnnnnnnnnnnnngtt |
285 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
39690920 |
actatttgtcgctcaatgagctcattcttgagctgaatcacttgatataaaaagcatgtcaatattatttaaatggttatattttttattttattttgtt |
39691019 |
T |
|
| Q |
286 |
gattaattataggtatgataacggggttgtcacttgcaagcactggaattgttggaaacttgattgtatatcttataagtgaattcaatatcaagagcat |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39691020 |
gattaattataggtatgataacggggttgtcacttgcaagcactggaattgttggaaacttgattgtatatcttataagtgaattcaatatcaagagcat |
39691119 |
T |
|
| Q |
386 |
caatgcagctcagattgtaaacgttgttgttggaagcacaagtctatttccacttgttgcagcaatccttgctgactctttctttggctcattcttagtt |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39691120 |
caatgcagctcagattgtaaacgttgttgttggaagcacaagtctatttccacttgttgcagcaatccttgctgactctttctttggctcattcttagtt |
39691219 |
T |
|
| Q |
486 |
gcctttgcttct |
497 |
Q |
| |
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|||||||||||| |
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| T |
39691220 |
gcctttgcttct |
39691231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 293 - 497
Target Start/End: Complemental strand, 39931190 - 39930986
Alignment:
| Q |
293 |
tataggtatgataacggggttgtcacttgcaagcactggaattgttggaaacttgattgtatatcttataagtgaattcaatatcaagagcatcaatgca |
392 |
Q |
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||||||||||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||| |||| |
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| T |
39931190 |
tataggtatgatagcggggatgtcacttggaagcaccggaattgttggaaacttgattgtatatcttacaagagaattcaatataaagagcatcactgca |
39931091 |
T |
|
| Q |
393 |
gctcagattgtaaacgttgttgttggaagcacaagtctatttccacttgttgcagcaatccttgctgactctttctttggctcattcttagttgcctttg |
492 |
Q |
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|||| ||| ||| ||||| ||||||||||| ||| |||||||| | || || |||||| ||||||| ||||||||||| || |||| |||||||||| |
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| T |
39931090 |
actcaaatttcaaatgttgtcgttggaagcaccagtatatttccagtagtggccgcaatcgttgctgattctttctttggttctttctatgttgcctttg |
39930991 |
T |
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| Q |
493 |
cttct |
497 |
Q |
| |
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||||| |
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|
| T |
39930990 |
cttct |
39930986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 290 - 491
Target Start/End: Original strand, 39700213 - 39700414
Alignment:
| Q |
290 |
aattataggtatgataacggggttgtcacttgcaagcactggaattgttggaaacttgattgtatatcttataagtgaattcaatatcaagagcatcaat |
389 |
Q |
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||||||||||||| || ||||||||||||| ||||| | ||||||| || || ||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
39700213 |
aattataggtatggtagcggggttgtcactagcaagtgcaggaattggggggaatttgattgtatatcttataaaagaattcaatataaagagcatcaat |
39700312 |
T |
|
| Q |
390 |
gcagctcagattgtaaacgttgttgttggaagcacaagtctatttccacttgttgcagcaatccttgctgactctttctttggctcattcttagttgcct |
489 |
Q |
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|||||||| |||||||||||||||||||||||| | | |||||| ||| | |||| |||||||||||||| |||||||||||||| |||| ||||||| |
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| T |
39700313 |
gcagctcaaattgtaaacgttgttgttggaagctccaatctattaccaatcattgctgcaatccttgctgattctttctttggctctttctctgttgcct |
39700412 |
T |
|
| Q |
490 |
tt |
491 |
Q |
| |
|
|| |
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|
| T |
39700413 |
tt |
39700414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 39690744 - 39690796
Alignment:
| Q |
19 |
ttcttactcatcaaacattattaattcactcacttttacacatctaaagagta |
71 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39690744 |
ttcttactcatcaaacattattaattcactcactcttacacatctaaagagta |
39690796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 349 - 423
Target Start/End: Complemental strand, 39935391 - 39935317
Alignment:
| Q |
349 |
ttgtatatcttataagtgaattcaatatcaagagcatcaatgcagctcagattgtaaacgttgttgttggaagca |
423 |
Q |
| |
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|||||||||||||| ||||||||||| |||||||||| ||| ||||||||||||||| ||||| | ||||||| |
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| T |
39935391 |
ttgtatatcttatacaagaattcaatataaagagcatcattgctgctcagattgtaaacattgttatcggaagca |
39935317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 39931607 - 39931573
Alignment:
| Q |
24 |
actcatcaaacattattaattcactcacttttaca |
58 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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|
| T |
39931607 |
actcatcaaacattattaattcactcacttttaca |
39931573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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