View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1438_low_6 (Length: 439)
Name: NF1438_low_6
Description: NF1438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1438_low_6 |
 | |
|
| [»] scaffold0391 (3 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 20 - 435
Target Start/End: Complemental strand, 33952940 - 33952524
Alignment:
| Q |
20 |
cgtttaacacacaatctcataaactttgacaatatacaggtcatcaagccttgctgcttctccgcgagcccacttttattgttattcatgtcaataatca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
33952940 |
cgtttaacacacaatctcataaactttgacaatatacaggtcatcaagccttgctgcttctccgcgagcccacttttatttttattaatgtcaataatca |
33952841 |
T |
|
| Q |
120 |
gtctttttctttgctcaaatggttccttggtgctttggtaaattccaagttctcttagaatatcatgaaggatgatgaagtgattattgtagttgttatc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33952840 |
gtctttttctttgctcaaatggttccttggcgctttggtaaattccaagttctcttagaatatcatgaaggatgatgaagtgattattgtagttgttatt |
33952741 |
T |
|
| Q |
220 |
gtccgtgtcacttgcatttttcctggtaaatgagaagaggttaattaattactt-aaagataaaaaatcatttgacaggatttatgtagagtatcattca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33952740 |
gtccgtgtcacttgcatttttcctggtaaatgagcagaggttaattagttacttaaaagataaaaaatcatttgacaggatttatgtagagtatcattca |
33952641 |
T |
|
| Q |
319 |
tgtgagatatttaacaatttaagtagcctagaagaaaatataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatgcctaat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33952640 |
tgtgagatatttaacaatttaagtagcctagaagaaaatataataataatagtcatagtaccttggtattatgacattagccaaattcatgatgcctaat |
33952541 |
T |
|
| Q |
419 |
ttgttgatgatgtccat |
435 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
33952540 |
ttgttgatgatttccat |
33952524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 20 - 435
Target Start/End: Complemental strand, 33960246 - 33959824
Alignment:
| Q |
20 |
cgtttaacacacaatctcataaactttgacaatatacaggtcatcaagccttgctgcttctccgcgagcccacttttattgttattcatgtcaataatca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
33960246 |
cgtttaacacacaatctcataaactttgacaatatacaggtcatcaagccttgctgcttctccgcgagcccacttttatttttattaatgtcaataatca |
33960147 |
T |
|
| Q |
120 |
gtctttttctttgctcaaatggttccttggtgctttggtaaattccaagttctcttagaatatcatgaaggatgatgaagtgattattgtagttgttatc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33960146 |
gtctttttctttgctcaaatggttccttggtgctttggtaaattccaagttctcttagaatatcatgaaggatgatgaagtgattattgtagttgttatc |
33960047 |
T |
|
| Q |
220 |
gtccgtgtcacttgcatttttcctggtaaatgagaagaggttaattaattactt-aaagataaaaaatcatttgacaggatttatgtagagtatcattca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33960046 |
gtccgtgtcacttgcatttttcctggtaaatgagcagaggttaattagttacttaaaagataaaaaattatttgacaggatttatgtagagtatcattca |
33959947 |
T |
|
| Q |
319 |
tgtgagatatttaacaatttaagtagcctagaagaaaat------ataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatg |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33959946 |
tgtgagatatttaacaatttaagtagcctagaagaaaatataataataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatg |
33959847 |
T |
|
| Q |
413 |
cctaatttgttgatgatgtccat |
435 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
33959846 |
cctaatttgttgatgatttccat |
33959824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 21 - 435
Target Start/End: Complemental strand, 33975545 - 33975124
Alignment:
| Q |
21 |
gtttaacacacaatctcataaactttgacaatatacaggtcatcaagccttgctgcttctccgcgagcccacttttattgttattcatgtcaataatcag |
120 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33975545 |
gtttaacacacaatctcataaactttgaaaatatacgggtcatcaagccttgctgcttctccgcgagcccacttttattgttattcatgtcaataatcag |
33975446 |
T |
|
| Q |
121 |
tctttttctttgctcaaatggttccttggtgctttggtaaattccaagttctcttagaatatcatgaaggatgatgaagtgattattgtagttgttatcg |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33975445 |
tctttttctttgctcaaatggttccttggtgctttggtaaattccaagttctcttagaatatcatgaaggatgatgaagtgattattgtagttgttattg |
33975346 |
T |
|
| Q |
221 |
tccgtgtcacttgcatttttcctggtaaatgagaagaggttaattaattactt-aaagataaaaaatcatttgacaggatttatgtagagtatcattcat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33975345 |
tccgtgtcacttgcatttttcctggtaaatgagcagaggttaattagttacttaaaagataaaaaattatttgacaggatttatgtagagtatcattcat |
33975246 |
T |
|
| Q |
320 |
gtgagatatttaacaatttaagtagcctagaagaaaat------ataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatgc |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33975245 |
gtgagatatttaacaatttaagtagcctagaagaaaatataataataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatgc |
33975146 |
T |
|
| Q |
414 |
ctaatttgttgatgatgtccat |
435 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
33975145 |
ctaatttgttgatgatttccat |
33975124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 21 - 435
Target Start/End: Complemental strand, 33992458 - 33992044
Alignment:
| Q |
21 |
gtttaacacacaatctcataaactttgacaatatacaggtcatcaagccttgctgcttctccgcgagcccacttttattgttattcatgtcaataatcag |
120 |
Q |
| |
|
|||||| |||||||||||| | ||||||||||||| ||||| ||||| ||||||||||||||||||| ||||| |||| ||||| |||||||||||||| |
|
|
| T |
33992458 |
gtttaatacacaatctcattacttttgacaatatacgggtcaacaagctttgctgcttctccgcgagctcacttctatttttattaatgtcaataatcag |
33992359 |
T |
|
| Q |
121 |
tctttttctttgctcaaatggttccttggtgctttggtaaattccaagttctcttagaatatcatgaaggatgatgaagtgattattgtagttgttatcg |
220 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33992358 |
tctttttctttgctcaaatggttgcttggtgctttggtaaattccaagatctcttagaatatcatgaaggatgatgaagtgattattgtagttgttattg |
33992259 |
T |
|
| Q |
221 |
tccgtgtcacttgcatttttcctggtaaatgagaagaggttaattaattacttaaagataaaaaatcatttgacaggatttatgtagagtatcattcatg |
320 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33992258 |
tctgtgtcacttgcatttttcctggtaaatgagaagaggttaattaattacttaaagataaaaaatcatttgacaggatttatgtagagtatcattcatg |
33992159 |
T |
|
| Q |
321 |
tgagatatttaacaatttaagtagcctagaagaaaatataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatgcctaattt |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33992158 |
tgagatatttaacaatttaagtagcctagaagaaaatataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatgcctaattt |
33992059 |
T |
|
| Q |
421 |
gttgatgatgtccat |
435 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
33992058 |
gttgatgatttccat |
33992044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 110 - 244
Target Start/End: Complemental strand, 33913678 - 33913544
Alignment:
| Q |
110 |
tcaataatcagtctttttctttgctcaaatggttccttggtgctttggtaaattccaagttctcttagaatatcatgaaggatgatgaagtgattattgt |
209 |
Q |
| |
|
||||||| |||||||||||||| |||| |||||||| | || |||| ||| |||| || |||||||||| ||||||||||| |||||||| |||||| |
|
|
| T |
33913678 |
tcaataagaagtctttttctttgttcaattggttcctggttgttttgataatttcctagctctcttagaagatcatgaaggaatatgaagtggctattgt |
33913579 |
T |
|
| Q |
210 |
agttgttatcgtccgtgtcacttgcatttttcctg |
244 |
Q |
| |
|
||| || | || ||||||||||||||||||||| |
|
|
| T |
33913578 |
agtagtaactttctgtgtcacttgcatttttcctg |
33913544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 120 - 245
Target Start/End: Complemental strand, 33942397 - 33942273
Alignment:
| Q |
120 |
gtctttttctttgctcaaatggttccttggtgctttggtaaattccaagttctcttagaatatcatgaaggatgatgaagtgattattgtagttgttatc |
219 |
Q |
| |
|
||||||||||||| |||| ||||||| |||| |||| ||| | ||||| ||||| || | ||||||||||| ||||||||||||| |||||| || || |
|
|
| T |
33942397 |
gtctttttctttgttcaataggttcctgggtgttttgataattcccaagctctctcagcagatcatgaaggacgatgaagtgatta-tgtagtagtaatt |
33942299 |
T |
|
| Q |
220 |
gtccgtgtcacttgcatttttcctgg |
245 |
Q |
| |
|
|| |||||||||||||||||||||| |
|
|
| T |
33942298 |
ttctgtgtcacttgcatttttcctgg |
33942273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 21 - 435
Target Start/End: Original strand, 8277817 - 8278231
Alignment:
| Q |
21 |
gtttaacacacaatctcataaactttgacaatatacaggtcatcaagccttgctgcttctccgcgagcccacttttattgttattcatgtcaataatcag |
120 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
8277817 |
gtttaacacaaaatctcataaactttgacaatatacgggtcatcaaaccttgctgcttctccgcgagcccacttttatttttattcttgtcaataatcag |
8277916 |
T |
|
| Q |
121 |
tctttttctttgctcaaatggttccttggtgctttggtaaattccaagttctcttagaatatcatgaaggatgatgaagtgattattgtagttgttatcg |
220 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8277917 |
tttttctctttgctcaaatggttccttggtgctttggtaaattccaagttctcttagaatatcatgaaggatgatgaagtgattattgtagttgttattg |
8278016 |
T |
|
| Q |
221 |
tccgtgtcacttgcatttttcctggtaaatgagaagaggttaattaattacttaaagataaaaaatcatttgacaggatttatgtagagtatcattcatg |
320 |
Q |
| |
|
|||||||||||| || |||| | |||||||||| |||||||||||| |||||||||||||| |||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
8278017 |
tccgtgtcactttcactttttcaggtaaatgagcagaggttaattagttacttaaagataagaaattatttcacaggatttatgtagagtatcattcatg |
8278116 |
T |
|
| Q |
321 |
tgagatatttaacaatttaagtagcctagaagaaaatataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatgcctaattt |
420 |
Q |
| |
|
|||||||||||||||||| | ||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
8278117 |
tgagatatttaacaattttattagccaagaagaaaatataataataatagtcctagtaccttggtattatcacattagccaaattcatgaggcctaattt |
8278216 |
T |
|
| Q |
421 |
gttgatgatgtccat |
435 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
8278217 |
attgatgatttccat |
8278231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 146 - 267
Target Start/End: Original strand, 2891495 - 2891616
Alignment:
| Q |
146 |
ttggtgctttggtaaattccaagttctcttagaatatcatgaaggatgatgaagtgattattgtagttgttatcgtccgtgtcacttgcatttttcctgg |
245 |
Q |
| |
|
||||||||||| |||||||||| ||| ||||| || ||||| |||||||||||| |||| ||||||| || || ||||||||||||||||| |||| |
|
|
| T |
2891495 |
ttggtgctttgagaaattccaagctctagtagaagattatgaaagatgatgaagtggctattatagttgtaattgtatgtgtcacttgcattttttctgg |
2891594 |
T |
|
| Q |
246 |
taaatgagaagaggttaattaa |
267 |
Q |
| |
|
|||||||| | ||| ||||||| |
|
|
| T |
2891595 |
taaatgagcaaagggtaattaa |
2891616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 103 - 265
Target Start/End: Complemental strand, 12408 - 12246
Alignment:
| Q |
103 |
attcatgtcaataatcagtctttttctttgctcaaatggttccttggtgctttggtaaattccaagttctcttagaatatcatgaaggatgatgaagtga |
202 |
Q |
| |
|
|||||||||||||||||| |||||||| | ||||| |||||| || |||| ||||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
12408 |
attcatgtcaataatcagcctttttctcttctcaattggttctttagtgcattggtaaattccaagatctcttagaagatcatgaaggatgatgaagtgg |
12309 |
T |
|
| Q |
203 |
ttattgtagttgttatcgtccgtgtcacttgcatttttcctggtaaatgagaagaggttaatt |
265 |
Q |
| |
|
||||||||||||| || ||| | ||||||||||||||||| ||| ||||| ||||||||||| |
|
|
| T |
12308 |
ttattgtagttgtaattgtctgcatcacttgcatttttcctagtatatgagcagaggttaatt |
12246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 435
Target Start/End: Complemental strand, 12174 - 12115
Alignment:
| Q |
376 |
gtaccttggtattatgacattagccaaattcatgatgcctaatttgttgatgatgtccat |
435 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||| |||||||||||| ||||| ||||| |
|
|
| T |
12174 |
gtaccttgctattatgacattagccagattcatggagcctaatttgtttatgatttccat |
12115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 12496 - 12435
Alignment:
| Q |
21 |
gtttaacacacaatctcataaactttgacaatatacaggtcatcaagccttgctgcttctcc |
82 |
Q |
| |
|
|||||||||||||| ||| || |||||||||||||| ||||||| || ||| ||||||||| |
|
|
| T |
12496 |
gtttaacacacaatgtcagaagttttgacaatatacaagtcatcaggctttgatgcttctcc |
12435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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