View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1438_low_7 (Length: 389)
Name: NF1438_low_7
Description: NF1438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1438_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 11 - 375
Target Start/End: Original strand, 40296370 - 40296734
Alignment:
| Q |
11 |
cacagaagtgatggatgagaatctgggcttaccaaaaggatacatcaagaaggcactgaatgatggagaaggagacaatgctttctttggcaccaaggtc |
110 |
Q |
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| T |
40296370 |
cacagaagtgatggatgagaatctgggcttaccaaaaggatacatcaagaaggcactgaatgatggagaaggagacaatgctttctttggcaccaaggtc |
40296469 |
T |
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| Q |
111 |
agccactacccaccctgccctcatccggaacttgtgaatggtctccgagctcatactgatgcaggaggtgtcatcctactgttccaagatgacaaggtag |
210 |
Q |
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| T |
40296470 |
agccactacccaccctgccctcatccggaacttgtgaatggtctccgagctcacactgatgcaggaggtgtcatcctactgttccaagatgacaaggtag |
40296569 |
T |
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| Q |
211 |
gtggccttcaaatgctcaaagatggggaatggcttgatgtccaacctttgccaaatgccattgtcatcaacactggtgatcagattgaagtcctgagcaa |
310 |
Q |
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| T |
40296570 |
gtggccttcaaatgctcaaagatggggaatggcttgatgtccaacctttgccaaatgccattgtcatcaacactggtgatcagattgaagtcctgagcaa |
40296669 |
T |
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| Q |
311 |
tggcagatacaagagttgttggcacagggttctgacctttacagagggtaccaggagatcaattg |
375 |
Q |
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| T |
40296670 |
tggcagatacaagagttgttggcacagggttctgacctttacagagggtaccaggagatcaattg |
40296734 |
T |
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