View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14390_high_11 (Length: 342)
Name: NF14390_high_11
Description: NF14390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14390_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 324
Target Start/End: Complemental strand, 39734414 - 39734107
Alignment:
| Q |
17 |
cataggttggttttattgtcttgaaatactcataaggaacatctcatgagaaataaataattaaagtattggtttaggaaatacttttggtcaggaacag |
116 |
Q |
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| T |
39734414 |
cataggttggttttattgtcttgaaatactcataaggaacatctcatgagaaataaataattaaagtattggtttaggaaatacttttggtcgggaacag |
39734315 |
T |
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| Q |
117 |
tcattgattgcaatagtcgaatatgacacgcgttcttatatcaatcataaaataaatcagagctctaaacttatttggaagttaaacttgctgcaaaaga |
216 |
Q |
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| T |
39734314 |
tcattgattgcaatagtcgaatatgacacgcgttcttatatcaatcataaaataaatcagagctctaaacttatttggaagttaaacttgctgcaaaaga |
39734215 |
T |
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| Q |
217 |
tgataggtcgctacctggcttgatttattttgggctctaaagtacgtaagaatatctacttacccttacatggtcagcgatgtctttctcatccacattg |
316 |
Q |
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| T |
39734214 |
tgataggtcgctacctggcttgatttattttgggctctaaagtacgtaagaatatctacttacccttacatggtcagcgatgtctttctcatccacattg |
39734115 |
T |
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| Q |
317 |
cgtgttac |
324 |
Q |
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| T |
39734114 |
cgtgttac |
39734107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 227 - 317
Target Start/End: Original strand, 39900303 - 39900393
Alignment:
| Q |
227 |
ctacctggcttgatttattttgggctctaaagtacgtaagaatatctacttacccttacatggtcagcgatgtctttctcatccacattgc |
317 |
Q |
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| T |
39900303 |
ctacctggcttgatttattttgggccctaaagtacataagaatatctacttacccataaatgttcagcagtgtctttctcatccacattgc |
39900393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 38966921 - 38966859
Alignment:
| Q |
36 |
cttgaaatactcataaggaacatctcatgagaaataaataattaaagtattggtttaggaaat |
98 |
Q |
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| T |
38966921 |
cttgaaatactcataaggaacttctcatgagaagtaaataaaaaaaatattggtttaggaaat |
38966859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 39866941 - 39867000
Alignment:
| Q |
266 |
gaatatctacttacccttacatggtcagcgatgtctttctcatccacattgcgtgttact |
325 |
Q |
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| T |
39866941 |
gaatatctacttaccattatatgctcagccgtgtctttctcatccacattgcatgttact |
39867000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 39912987 - 39913063
Alignment:
| Q |
234 |
gcttgatttattttgggctctaaagtacgtaagaatatctacttacccttacatggtcagcgatgtctttctcatcc |
310 |
Q |
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| T |
39912987 |
gcttggtttaatttaggccctaaattacataagaatatctacttacccttaaatgcgcagcagtgtctttctcatcc |
39913063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 37468870 - 37468954
Alignment:
| Q |
231 |
ctggcttgatttattttgggctctaaagtacgtaagaatatctacttacccttacatggtcagcgatgtctttctcatccacattgc |
317 |
Q |
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| T |
37468870 |
ctggcttgactaattttgggctctaaaata--tgagaaaatctactaacccttaaatgctcagcaatatctttctcgtccacattgc |
37468954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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