View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14390_high_12 (Length: 328)
Name: NF14390_high_12
Description: NF14390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14390_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 292
Target Start/End: Original strand, 31720846 - 31721125
Alignment:
| Q |
13 |
gaaaaggttgttgtaccatttgtatacctacgaatatttaacaaaacattcataaacttcaagatttgactaacaaaaacataaataattatattnnnnn |
112 |
Q |
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| T |
31720846 |
gaaaagtttgtcttaccatttgtatacctacgaatatttaacaaaacattcataaacttcaagatttgactaacaaaaacataaataattatattaaaaa |
31720945 |
T |
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| Q |
113 |
nntcatgcgtgtttagttccttaataatatacatttcaaccaatcttgggagaggtctatgctacccgaatcaactctttaagatatcatcttcaaattt |
212 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31720946 |
aatcatacgtgtttagttccctaataatatacatttcaaccaatcttgggagaggtctatgctacccgaatcaactctttaagatatcatcttcaaattt |
31721045 |
T |
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| Q |
213 |
attacacgtacaacctttttaacattttcattattctctaggttttcgactatcaccatatggtgttttattttggggtg |
292 |
Q |
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| T |
31721046 |
actacacgtacaacctttttaacattttcattattctctaggttttcgactatcaccatgtggtgttttattttggggtg |
31721125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 9488809 - 9488867
Alignment:
| Q |
121 |
gtgtttagttccttaataatatacatttcaaccaatcttgggagaggtctatgctaccc |
179 |
Q |
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| T |
9488809 |
gtgtttagttccttaatgatatacatttgaactaatcttaggcaaggtctatgttaccc |
9488867 |
T |
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