View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14390_high_15 (Length: 257)
Name: NF14390_high_15
Description: NF14390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14390_high_15 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 22688188 - 22687949
Alignment:
| Q |
18 |
atatattgaatgcaattgcaggtcctctatcaaatttaacttttggaccataaatcttcactagagaaaccccttctgtgttaggatgcttaagcttcaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22688188 |
atatattgaatgcaattgcaggtcctctatcaaattttacttttggaccataaatcgtcactagagaaaccccttctgtgttaggatgcttaagcttcaa |
22688089 |
T |
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| Q |
118 |
catcgaattcaccaaccagtttatcaagtacctcgcgcgatcattgatcagtaacaatcctaatgaatccacttcatctaagcacctacattgaatatca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||| |
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| T |
22688088 |
catcgaattcaccaaccagtttatcaagtacctcgcgcgatcattgatcagtaacaatcctaaagaatccacttgatctaagcacctacattcaatatca |
22687989 |
T |
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| Q |
218 |
aagttctcatttttatcactttctttaacacccttttcat |
257 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
22687988 |
aagtgttcatttttatcactttctttaacacccttttcat |
22687949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 22750880 - 22751119
Alignment:
| Q |
18 |
atatattgaatgcaattgcaggtcctctatcaaatttaacttttggaccataaatcttcactagagaaaccccttctgtgttaggatgcttaagcttcaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22750880 |
atatattgaatgcaattgcaggtcctctatcaaattttacttttggaccataaatcgtcactagagaaaccccttctgtgttaggatgcttaagcttcaa |
22750979 |
T |
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| Q |
118 |
catcgaattcaccaaccagtttatcaagtacctcgcgcgatcattgatcagtaacaatcctaatgaatccacttcatctaagcacctacattgaatatca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||| |
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| T |
22750980 |
catcgaattcaccaaccagtttatcaagtacctcgcgcgatcattgatcagtaacaatcctaaagaatccacttgatctaagcacctacattcaatatca |
22751079 |
T |
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| Q |
218 |
aagttctcatttttatcactttctttaacacccttttcat |
257 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
22751080 |
aagtgttcatttttatcactttctttaacacccttttcat |
22751119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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