View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14390_high_18 (Length: 219)

Name: NF14390_high_18
Description: NF14390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14390_high_18
NF14390_high_18
[»] chr8 (2 HSPs)
chr8 (1-202)||(27813597-27813798)
chr8 (91-202)||(25640836-25640948)
[»] chr2 (4 HSPs)
chr2 (91-202)||(30268883-30268995)
chr2 (91-202)||(31332234-31332346)
chr2 (91-202)||(31338964-31339076)
chr2 (31-202)||(31481696-31481868)
[»] chr7 (1 HSPs)
chr7 (91-202)||(4683211-4683323)
[»] chr4 (2 HSPs)
chr4 (91-202)||(53302209-53302321)
chr4 (91-202)||(47064147-47064259)
[»] chr3 (1 HSPs)
chr3 (91-202)||(7404212-7404324)
[»] chr6 (1 HSPs)
chr6 (159-202)||(30824851-30824894)


Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 27813597 - 27813798
Alignment:
Q  1 aagttatcaatatttcaggtaaaggtatctactgcagtggcaccacatcacaaaatctgccccgaccaatgtccacaagtatcctttcgtctctgatagc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| |||||||||||||| |||||||||||||||| ||||||||||    
T  27813597 aagttatcaatatttcaggtaaagttatctactgcagtggcactacataacaaaatcagccccgaccaatgtacacaagtatcctttcggctctgatagc 27813696  T
Q  101 caccactgtcggagctgaagcagcgatagttttgttgtgtgtgacagaaaactgaccggcttttgtaccatcgaggaacaaatatccatttcttcaaccc 200  Q
    |||||||||||||||||||||||| ||||||| |||||| ||||| ||||||||| |||| |||||||||||||| ||||||||||||||||||||||||    
T  27813697 caccactgtcggagctgaagcagcaatagtttggttgtgcgtgacggaaaactgatcggcatttgtaccatcgagaaacaaatatccatttcttcaaccc 27813796  T
Q  201 ta 202  Q
    ||    
T  27813797 ta 27813798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 25640836 - 25640948
Alignment:
Q  91 ctctgatagccacc-actgtcggagctgaagcagcgatagttttgttgtgtgtgacagaaaactgaccggcttttgtaccatcgaggaacaaatatccat 189  Q
    |||||||||||||| ||| || ||||| ||||||  ||||||| |||||| ||||| | |||||| ||||||| |||| ||| ||||||| |||||||||    
T  25640836 ctctgatagccacccactttcagagctaaagcagtaatagtttggttgtgcgtgacgggaaactgtccggcttctgtatcattgaggaactaatatccat 25640935  T
Q  190 ttcttcaacccta 202  Q
    |||||||| ||||    
T  25640936 ttcttcaatccta 25640948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 30268883 - 30268995
Alignment:
Q  91 ctctgatagccacc-actgtcggagctgaagcagcgatagttttgttgtgtgtgacagaaaactgaccggcttttgtaccatcgaggaacaaatatccat 189  Q
    |||| ||||||||| |||||||||||||||||||| ||||||| |||||||||||| | |||||||||| ||| |||| ||||||||||| |||||||||    
T  30268883 ctctaatagccacccactgtcggagctgaagcagcaatagtttggttgtgtgtgacgggaaactgaccgacttctgtatcatcgaggaactaatatccat 30268982  T
Q  190 ttcttcaacccta 202  Q
    |||||||||||||    
T  30268983 ttcttcaacccta 30268995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 31332346 - 31332234
Alignment:
Q  91 ctctgatagccacc-actgtcggagctgaagcagcgatagttttgttgtgtgtgacagaaaactgaccggcttttgtaccatcgaggaacaaatatccat 189  Q
    |||||||||||||| |||||||||||| ||||||| ||||||| |||||| ||||| | |||| ||||| ||| |||| ||| ||||||| |||||||||    
T  31332346 ctctgatagccacccactgtcggagctaaagcagcaatagtttggttgtgcgtgacgggaaacagaccgacttctgtatcattgaggaactaatatccat 31332247  T
Q  190 ttcttcaacccta 202  Q
    |||||||| ||||    
T  31332246 ttcttcaatccta 31332234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 31339076 - 31338964
Alignment:
Q  91 ctctgatagccacc-actgtcggagctgaagcagcgatagttttgttgtgtgtgacagaaaactgaccggcttttgtaccatcgaggaacaaatatccat 189  Q
    |||||||||||||| || ||||||||| ||||||| ||||||| |||||| ||||| | |||| ||||| ||| |||| ||| ||||||| |||||||||    
T  31339076 ctctgatagccacccacagtcggagctaaagcagcaatagtttggttgtgcgtgacgggaaacagaccgacttctgtatcattgaggaactaatatccat 31338977  T
Q  190 ttcttcaacccta 202  Q
    |||||||| ||||    
T  31338976 ttcttcaatccta 31338964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 31 - 202
Target Start/End: Original strand, 31481696 - 31481868
Alignment:
Q  31 actgcagtggcaccacatcacaaaatctgcc-ccgaccaatgtccacaagtatcctttcgtctctgatagccaccactgtcggagctgaagcagcgatag 129  Q
    |||||||||||||||||| |||||||| ||| ||||||||||| |||||   |||| || |||| || ||||||||||| |||  ||| |||||| |||     
T  31481696 actgcagtggcaccacataacaaaatcagcctccgaccaatgtacacaatcgtcctctcctctccgagagccaccactgccggcactggagcagcaatat 31481795  T
Q  130 ttttgttgtgtgtgacagaaaactgaccggcttttgtaccatcgaggaacaaatatccatttcttcaacccta 202  Q
    ||| ||| ||  |||  | || |||| |||||| ||||||||| || ||| ||||||||||||||||||||||    
T  31481796 tttggttctgcatgatgggaacctgatcggcttctgtaccatcaagaaaccaatatccatttcttcaacccta 31481868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 4683323 - 4683211
Alignment:
Q  91 ctctgatagccacc-actgtcggagctgaagcagcgatagttttgttgtgtgtgacagaaaactgaccggcttttgtaccatcgaggaacaaatatccat 189  Q
    |||||||||||||| |||||||||||| ||||||| ||||||| |||||| ||||| | |||||||||||||| |||| ||||||||||| |||||||||    
T  4683323 ctctgatagccacccactgtcggagctaaagcagcaatagtttggttgtgcgtgacgggaaactgaccggcttctgtatcatcgaggaactaatatccat 4683224  T
Q  190 ttcttcaacccta 202  Q
    |||||||| ||||    
T  4683223 ttcttcaatccta 4683211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 53302209 - 53302321
Alignment:
Q  91 ctctgatagccacc-actgtcggagctgaagcagcgatagttttgttgtgtgtgacagaaaactgaccggcttttgtaccatcgaggaacaaatatccat 189  Q
    |||||||||||||| |||||||||||||||||||| ||| ||| |||||| ||||| | |||||||||| ||| |||| ||||||||||| |||||||||    
T  53302209 ctctgatagccacccactgtcggagctgaagcagcaatactttggttgtgcgtgacgggaaactgaccgacttctgtatcatcgaggaactaatatccat 53302308  T
Q  190 ttcttcaacccta 202  Q
    |||||||||||||    
T  53302309 ttcttcaacccta 53302321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 47064259 - 47064147
Alignment:
Q  91 ctctgatagccacc-actgtcggagctgaagcagcgatagttttgttgtgtgtgacagaaaactgaccggcttttgtaccatcgaggaacaaatatccat 189  Q
    |||| ||||||||| |||||||||||||||||||| ||||||| |||||| ||||| | |||||||||| ||| |||| ||||||||||| |||||||||    
T  47064259 ctctaatagccacccactgtcggagctgaagcagcaatagtttggttgtgcgtgacgggaaactgaccgacttctgtatcatcgaggaactaatatccat 47064160  T
Q  190 ttcttcaacccta 202  Q
    ||||| |||||||    
T  47064159 ttctttaacccta 47064147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 7404324 - 7404212
Alignment:
Q  91 ctctgatagccacc-actgtcggagctgaagcagcgatagttttgttgtgtgtgacagaaaactgaccggcttttgtaccatcgaggaacaaatatccat 189  Q
    |||||||||||||| |||||||||||| ||||||| ||||||| |||||| ||||| | |||||||||||||| |||| ||||||||||| |||||||||    
T  7404324 ctctgatagccacccactgtcggagctaaagcagcaatagtttggttgtgcgtgacgggaaactgaccggcttctgtatcatcgaggaactaatatccat 7404225  T
Q  190 ttcttcaacccta 202  Q
    |||||||| ||||    
T  7404224 ttcttcaatccta 7404212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 30824851 - 30824894
Alignment:
Q  159 gcttttgtaccatcgaggaacaaatatccatttcttcaacccta 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  30824851 gcttttgtaccatcgaggaacaaatatccatttcttcaacccta 30824894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University