View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14390_high_9 (Length: 373)
Name: NF14390_high_9
Description: NF14390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14390_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 22 - 371
Target Start/End: Original strand, 6393531 - 6393880
Alignment:
| Q |
22 |
acacttttcaccacattaaaaacaagatgctccatgtagtcaaatacatgaaaaattttacttataaattcaatcgaactcgtcaaattagcaatgcttg |
121 |
Q |
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| T |
6393531 |
acacttttcaccacattaaaaacaagatgctccatgtagtcaaatacatgaaaaattttacttataaattcaatcgaactcatcaaattagcaatgcttg |
6393630 |
T |
|
| Q |
122 |
agaaaccaagggcagtactcacaatagctcttgccctcattcactttccttcctttgttgtgatccaaaagaacttgtctgcaacctcatccacacaatt |
221 |
Q |
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| T |
6393631 |
agaaaccaagggcagtactcacaatagctcttgccctcattcacttgccttcctttgttgtgatccaaaagaacttgtctgcaacctcatccacacaatt |
6393730 |
T |
|
| Q |
222 |
accaagagtagcacattggtctccctctcgtgatagttgaacttatcagcaaggtttggattatcaggtctgacttcatttaaaattagcgagagaacag |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6393731 |
accaagagtagcacattggtctccctctcgtgatagttgaacttatcagcaaggtttggattatcaggtctgacttcatttaaaattagcgagagaacag |
6393830 |
T |
|
| Q |
322 |
catcaacaattgattgaacctctgtagtagttgaacttgtaccctctctg |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6393831 |
catcaacaattgattgaacctctgtagtagttgaacttgtaccctctctg |
6393880 |
T |
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