View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14390_low_1 (Length: 706)
Name: NF14390_low_1
Description: NF14390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14390_low_1 |
 | |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
| [»] scaffold0031 (1 HSPs) |
| | |
|
| [»] scaffold0056 (2 HSPs) |
| | |
|
| [»] scaffold0054 (1 HSPs) |
| | |
|
| [»] scaffold0099 (1 HSPs) |
| | |
|
| [»] scaffold0039 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 545; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 18 - 699
Target Start/End: Original strand, 23776459 - 23777138
Alignment:
| Q |
18 |
agaagaacacccacgtaacatagaaacgtaattaaattttagacacatgcactccaccgaatgaaggaacttacgtgtgctaagaagttgtttgattact |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
23776459 |
agaagaacacccacgtaacatagaaacgtaattaaattttagacacatgcactccaccgaatgaaggaactaacttgtgctaagaagttgtttgattact |
23776558 |
T |
|
| Q |
118 |
aacgaaaacaattgattgactgaaatcgaacaggaaatcggtgaggtggagagcaaacttgtgaaaacggtagcgacagaaataatgcgattgaagactt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | | ||| ||||||||||||||||||||| |
|
|
| T |
23776559 |
aacgaaaacaattgattgactgaaatcgaacaggaaaccggtgaggtggagagcaaacttgtgaaaacgacaacaacataaataatgcgattgaagactt |
23776658 |
T |
|
| Q |
218 |
ggaggttaaccgattggaaaaaattgagaaaacaatcgatgtgaagaaacagtacggtggtaaagtatcagaccctgtgattacgttgttggcttaaatc |
317 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23776659 |
ggaggttaaccgattggaagaaattgagaaaacaagcgatgtgaagaaacaatacggcggtaaagtatcagaccctgtgattacgttgttggcttaaata |
23776758 |
T |
|
| Q |
318 |
atccatcatcatcaggagaaaaacaagaaaagaacacgattatgattgaaaatcaatctaatcgacaaaacagactctcacaaggggcgatgagtgaaac |
417 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23776759 |
atc---catcatcaggagaaaaacaagaaaagaacacgattaagattgaaaatcaatctaatcgacaaaacagactctcacaaggggcgatgagtgaaac |
23776855 |
T |
|
| Q |
418 |
cctaggagagaaaaatcgcaaaatcgcttaatcgcttcttcacaatag-tacacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactc |
516 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||| || ||||||||||||||| |||||||||||||||||| |
|
|
| T |
23776856 |
cctaggagagaaaaatcacaaaatcgcttaatcgcttcttcacaatagttacacggtaccaactttttgtgtcaacaaattaaccattttgtgattactc |
23776955 |
T |
|
| Q |
517 |
tcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtagtagaatactttgaccgaaaatgctagaacttgagggactatgtacgttat |
616 |
Q |
| |
|
|| | |||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
23776956 |
tcgtccatttgttgtcttaacagattcatcgactctgttgttaagggtagtagagtactttgaccgaaaatgctagaacttgagggactatgtacgtaat |
23777055 |
T |
|
| Q |
617 |
tgtgaacgaatttgtttgttctgcagatgcggacgcactattatgcacatttgccatcatcgaagttggcataccctatgctt |
699 |
Q |
| |
|
|||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23777056 |
tgtgaacggatttttttgttctgcaaatgcggacgcactattatgcacatttgccatcatcgaagttggcataccatatgctt |
23777138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 493 - 691
Target Start/End: Original strand, 23802394 - 23802596
Alignment:
| Q |
493 |
aaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtagtagaatactttgaccgaaaatgctag |
592 |
Q |
| |
|
||||| ||||||| |||||||||||||| |||| |||| ||||||| ||||||||||||||||||||| ||| ||||| || ||||||| |||||||| | |
|
|
| T |
23802394 |
aaattaaccatttcgtgattactctcatccatttgttgccttaacaaattcatcgaatctgttgttaatggtggtagagtattttgaccaaaaatgctcg |
23802493 |
T |
|
| Q |
593 |
aacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgcacatttgccatcatcgaagttggcat |
688 |
Q |
| |
|
|||| ||||||||||||| ||| |||||||| | ||||| ||| |||| | ||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
23802494 |
aactcgagggactatgtatgttgtgcattgtgaatggatttgcttggtctgaaaatgcggacgcactattatgtacattttccatcatcgaagttggcat |
23802593 |
T |
|
| Q |
689 |
acc |
691 |
Q |
| |
|
||| |
|
|
| T |
23802594 |
acc |
23802596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 474 - 691
Target Start/End: Complemental strand, 27604559 - 27604338
Alignment:
| Q |
474 |
accaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtagtagaata |
573 |
Q |
| |
|
||||||||||||||| |||||||| | ||||| ||| |||||||||| |||| ||||||||||| |||||||||||||||||| || | | ||||| || |
|
|
| T |
27604559 |
accaatttgttgtgttaacaaattaatcatttcgtggttactctcatccattttttgtcttaacaaattcatcgaatctgttgtcaatgttggtagagta |
27604460 |
T |
|
| Q |
574 |
ctttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgcacatttg |
669 |
Q |
| |
|
| |||| || ||||||||||||||||||||||||||||| |||||||||| |||| ||| |||||| |||| |||||||||||||| ||||||| |
|
|
| T |
27604459 |
ttccgaccaaatatgctagaacttgagggactatgtacgttgtgcattgtgaacgggtttgcttggtctgcaaatgcagacgcactattatgtacatttg |
27604360 |
T |
|
| Q |
670 |
ccatcatcgaagttggcatacc |
691 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
27604359 |
ccatcatcagagttggcatacc |
27604338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 467 - 691
Target Start/End: Original strand, 22800636 - 22800864
Alignment:
| Q |
467 |
acacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtag |
566 |
Q |
| |
|
|||| |||||||||| || ||| |||||||| ||||||| || ||||||||||| |||| |||| ||||| | ||| |||||||||||||||| |||| | |
|
|
| T |
22800636 |
acacggtaccaattttttttgtaaacaaattaaccatttcgtaattactctcatccatttgttgccttaaaaaattaatcgaatctgttgttacgggtgg |
22800735 |
T |
|
| Q |
567 |
tagaatactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgc |
662 |
Q |
| |
|
|||| || || ||| |||||||||||| ||||||||||||||| | | |||||||||||||||| ||| ||| || ||| |||| |||||||||| |
|
|
| T |
22800736 |
tagagtatttcaaccaaaaatgctagaaattgagggactatgtatggtgtgcattgtgaacgaatttgcttgatctacaaatgtggacacactattatgt |
22800835 |
T |
|
| Q |
663 |
acatttgccatcatcgaagttggcatacc |
691 |
Q |
| |
|
| ||||| ||||||| ||||||||||||| |
|
|
| T |
22800836 |
aaatttgacatcatcaaagttggcatacc |
22800864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 467 - 614
Target Start/End: Complemental strand, 24985804 - 24985657
Alignment:
| Q |
467 |
acacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtag |
566 |
Q |
| |
|
|||| ||||||||||||||||| ||| |||| ||||||| ||| |||||||||| |||| |||||||||||| |||||||||||||||||| || || | |
|
|
| T |
24985804 |
acacggtaccaatttgttgtgttaacgaattaaccatttcgtggttactctcatccatttgttgtcttaacaaattcatcgaatctgttgtcaaccgtgg |
24985705 |
T |
|
| Q |
567 |
tagaatactttgaccgaaaatgctagaacttgagggactatgtacgtt |
614 |
Q |
| |
|
|||| || | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24985704 |
tagagtattccgaccgaaaatgctagaacttgagggactatgtacgtt |
24985657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 467 - 691
Target Start/End: Original strand, 25596869 - 25597097
Alignment:
| Q |
467 |
acacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtag |
566 |
Q |
| |
|
|||| |||||||||| ||||||||||||||| ||||||| |||||||| ||||| |||| ||||| |||||| |||| ||||||||| |||||| | |
|
|
| T |
25596869 |
acacggtaccaatttcttgtgtcaacaaattaaccatttcgtgattaccctcatccatttgttgtgttaacaagttcaccgaatctgtcgttaagactga |
25596968 |
T |
|
| Q |
567 |
tagaatactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgc |
662 |
Q |
| |
|
|| | || || |||| ||||||||||||||| |||||||||||| ||| ||||||||| ||||| ||| ||| || ||||||||||||||||||| |
|
|
| T |
25596969 |
tatagtatttcgaccaaaaatgctagaactttagggactatgtatgttgtgcattgtgaacatatttgcttggtcttcaaatgcggacgcactattatgt |
25597068 |
T |
|
| Q |
663 |
acatttgccatcatcgaagttggcatacc |
691 |
Q |
| |
|
||||||||||| | |||||||||||||| |
|
|
| T |
25597069 |
acatttgccattactgaagttggcatacc |
25597097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 20270742 - 20270775
Alignment:
| Q |
472 |
gtaccaatttgttgtgtcaacaaattgaccattt |
505 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
20270742 |
gtaccaatttgttgtgtcaacatattgaccattt |
20270775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 6e-70; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 240 - 440
Target Start/End: Complemental strand, 32298418 - 32298219
Alignment:
| Q |
240 |
attgagaaaacaatcgatgtgaagaaa-cagtacggtggtaaagtatcagaccctgtgattacgttgttggcttaaatcatccatcatcatcaggagaaa |
338 |
Q |
| |
|
||||| ||||||| ||||||||| ||| || ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||| | ||| |
|
|
| T |
32298418 |
attgacaaaacaagcgatgtgaaaaaaacaatacggcggtaaagtatcagaccatgtgattacgttgttggcttaaatcatccatcaacat--gtgaaaa |
32298321 |
T |
|
| Q |
339 |
aacaagaaaagaacacgattatgattgaaaatcaatctaatcgacaaaacagactctcacaaggggcgatgagtgaaaccctaggagagaaaaatcgcaa |
438 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32298320 |
aacaagaaaagaacacgattaagattgaaaatcaatctaatcgacaaaacagactctcacaaggggcgatgagtgaaaccgtaggagagaaaaatcgcaa |
32298221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 467 - 691
Target Start/End: Original strand, 7964875 - 7965103
Alignment:
| Q |
467 |
acacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtag |
566 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||| |||||||||||| ||||| |||||||| |||||| | | |
|
|
| T |
7964875 |
acacagtaccaatttgttgtgtcaacaaattaaccatttcgtgattactctcatccatttgttgtcttaacaagttcattgaatctgtcgttaagactgg |
7964974 |
T |
|
| Q |
567 |
tagaatactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgc |
662 |
Q |
| |
|
|||| || || |||| |||||| |||||||||||||||||||| |||| ||||||||| ||||| ||| |||||| ||||||||||||||||||| |
|
|
| T |
7964975 |
tagattatttcgaccaaaaatgttagaacttgagggactatgtgcgttgtgaattgtgaacagatttgcttggtctgcaaatgcggacgcactattatgt |
7965074 |
T |
|
| Q |
663 |
acatttgccatcatcgaagttggcatacc |
691 |
Q |
| |
|
|||||||||||||| |||||||||||||| |
|
|
| T |
7965075 |
acatttgccatcattgaagttggcatacc |
7965103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 467 - 691
Target Start/End: Complemental strand, 18099393 - 18099165
Alignment:
| Q |
467 |
acacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtag |
566 |
Q |
| |
|
|||| |||||||||||||| || |||||||| ||||||| ||| ||| |||||| |||| |||||||||||| ||||||||||| ||| || || ||| | |
|
|
| T |
18099393 |
acacggtaccaatttgttgcgttaacaaattaaccatttcgtggttagtctcatccatttgttgtcttaacaaattcatcgaatatgtcgtcaacggtgg |
18099294 |
T |
|
| Q |
567 |
tagaatactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgc |
662 |
Q |
| |
|
|| | || | |||| ||||| |||||||||||||||| ||||||||| ||||||||| ||||| ||| |||||| ||||||||||||||| ||| |
|
|
| T |
18099293 |
tatagtattccgaccaaaaattctagaacttgagggacaatgtacgttgtgcattgtgaacatatttgcttgatctgcaaatgcggacgcactatgatgt |
18099194 |
T |
|
| Q |
663 |
acatttgccatcatcgaagttggcatacc |
691 |
Q |
| |
|
|||||| |||||||||||||||||||||| |
|
|
| T |
18099193 |
acattttccatcatcgaagttggcatacc |
18099165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 467 - 611
Target Start/End: Original strand, 14952592 - 14952736
Alignment:
| Q |
467 |
acacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtag |
566 |
Q |
| |
|
|||| |||||||||| || || |||||||| ||||||| ||| |||||||||| |||| |||||||||||| |||||| |||| |||||| || | |
|
|
| T |
14952592 |
acacggtaccaatttattacgttaacaaattaaccatttcgtggttactctcatccatttgttgtcttaacaaattcatggaatttgttgtcaacaacgg |
14952691 |
T |
|
| Q |
567 |
tagaatactttgaccgaaaatgctagaacttgagggactatgtac |
611 |
Q |
| |
|
|||| || | |||| ||||||||||||||||||||| ||||||| |
|
|
| T |
14952692 |
tagagtattccgaccaaaaatgctagaacttgagggaatatgtac |
14952736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 467 - 611
Target Start/End: Original strand, 15380185 - 15380329
Alignment:
| Q |
467 |
acacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtag |
566 |
Q |
| |
|
|||| |||||||||| || || |||||||| ||||||| ||| |||||||||| |||| |||||||||||| |||||| |||| |||||| || | |
|
|
| T |
15380185 |
acacggtaccaatttattacgttaacaaattaaccatttcgtggttactctcatccatttgttgtcttaacaaattcatggaatttgttgtcaacaacgg |
15380284 |
T |
|
| Q |
567 |
tagaatactttgaccgaaaatgctagaacttgagggactatgtac |
611 |
Q |
| |
|
|||| || | |||| ||||||||||||||||||||| ||||||| |
|
|
| T |
15380285 |
tagagtattccgaccaaaaatgctagaacttgagggaatatgtac |
15380329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 112; Significance: 3e-56; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 467 - 691
Target Start/End: Original strand, 37193 - 37421
Alignment:
| Q |
467 |
acacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtag |
566 |
Q |
| |
|
|||| |||||||||| ||||||||| ||||| ||||||| |||||||||||||| ||| |||||||||||| |||||||||||| ||| |||| | | |
|
|
| T |
37193 |
acacggtaccaatttcttgtgtcaataaattaaccatttcgtgattactctcatctatttgttgtcttaacaaattcatcgaatcacttgataagactgg |
37292 |
T |
|
| Q |
567 |
tagaatactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgc |
662 |
Q |
| |
|
|||| || ||||||| ||||||||||||||||||||||||||| |||| ||||||||| ||||| ||| ||||||||||||||| ||||||||||| |
|
|
| T |
37293 |
tagagtattttgaccaaaaatgctagaacttgagggactatgtgcgttgtgagttgtgaacggatttgcttggtctgcagatgcggacacactattatgc |
37392 |
T |
|
| Q |
663 |
acatttgccatcatcgaagttggcatacc |
691 |
Q |
| |
|
|||||| |||||||||||||||||||||| |
|
|
| T |
37393 |
acattttccatcatcgaagttggcatacc |
37421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 474 - 691
Target Start/End: Complemental strand, 12812046 - 12811825
Alignment:
| Q |
474 |
accaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtagtagaata |
573 |
Q |
| |
|
|||||||||| |||| |||||||| ||||||| |||||||||||||| |||| |||||||||||| ||||||||||||||||| || ||| ||||| || |
|
|
| T |
12812046 |
accaatttgtcgtgttaacaaattaaccatttcgtgattactctcatccatttgttgtcttaacaaattcatcgaatctgttgacaacggtggtagagta |
12811947 |
T |
|
| Q |
574 |
ctttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgcacatttg |
669 |
Q |
| |
|
|| |||| ||||||||||||||| |||||||||||| ||| |||||||||| ||||| ||| |||||| |||||||| |||||||||| | ||||| |
|
|
| T |
12811946 |
tttcgaccaaaaatgctagaacttaagggactatgtatgttgtgcattgtgaacggatttgattgatctgcaaatgcggacacactattatgtatatttg |
12811847 |
T |
|
| Q |
670 |
ccatcatcgaagttggcatacc |
691 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
12811846 |
ccatcattgaagttggcatacc |
12811825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 2e-51; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 467 - 691
Target Start/End: Complemental strand, 10159910 - 10159682
Alignment:
| Q |
467 |
acacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtag |
566 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| ||||||||||| |||||||| | || | |||||||||||| |||||||||||||||||| || | | | |
|
|
| T |
10159910 |
acacggtaccaatttgttgtgttaacaaattaaccattttgtggttactctcgtccaattgttgtcttaacaaattcatcgaatctgttgtcaacgttgg |
10159811 |
T |
|
| Q |
567 |
tagaatactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgc |
662 |
Q |
| |
|
|||| || | |||| |||||||||||||||||||||||||||||||| ||| |||||| |||| ||| |||||| |||||||| |||||||||| |
|
|
| T |
10159810 |
tagagtattccgaccaaaaatgctagaacttgagggactatgtacgttgtgcattatgaacggattttcttggtctgcaaatgcggacacactattatgt |
10159711 |
T |
|
| Q |
663 |
acatttgccatcatcgaagttggcatacc |
691 |
Q |
| |
|
|||||||| |||||||||||||||||||| |
|
|
| T |
10159710 |
acatttgcaatcatcgaagttggcatacc |
10159682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 472 - 691
Target Start/End: Original strand, 17024048 - 17024271
Alignment:
| Q |
472 |
gtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtagtagaa |
571 |
Q |
| |
|
|||||||||||||||| |||| |||| ||||||| ||||||||||||| |||| |||||||||||| ||||||||||| ||| ||||| | ||||| |
|
|
| T |
17024048 |
gtaccaatttgttgtgccaacgaattaaccatttcatgattactctcatccatttgttgtcttaacaaattcatcgaattagtttttaagactggtagag |
17024147 |
T |
|
| Q |
572 |
tactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgcacatt |
667 |
Q |
| |
|
|| || |||| ||||||||||||||| |||||||||| ||| |||||||||| ||||||||| |||| | ||| ||||||||||||||||| ||| |
|
|
| T |
17024148 |
tatttcgaccaaaaatgctagaactttggggactatgtgtgttgtgaattgtgaacggatttgtttggtctgaaaatgtggacgcactattatgcaaatt |
17024247 |
T |
|
| Q |
668 |
tgccatcatcgaagttggcatacc |
691 |
Q |
| |
|
| |||||||||||||||| ||||| |
|
|
| T |
17024248 |
ttccatcatcgaagttggaatacc |
17024271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 467 - 691
Target Start/End: Original strand, 25400778 - 25401005
Alignment:
| Q |
467 |
acacagtaccaatttgttgtgtcaacaaattgaccattttgtgatta--ctctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggt |
564 |
Q |
| |
|
|||| |||| |||||||| ||| |||||||| ||||||||||| ||| ||||| | |||| || ||||||||| |||||| ||||||||||| || | | |
|
|
| T |
25400778 |
acacggtacaaatttgttatgttaacaaattaaccattttgtggttatactctcgtccatttgtcgtcttaacaaattcattgaatctgttgtcaacgtt |
25400877 |
T |
|
| Q |
565 |
agtagaatactttgaccgaaaatgctagaacttgagggactatgtacgtt-attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgca |
663 |
Q |
| |
|
||||| || | |||| ||||||||||||||||||||| |||||||| |||||||||| ||||| ||| |||||| |||||||| |||||||||| | |
|
|
| T |
25400878 |
ggtagagtattccgaccagaaatgctagaacttgagggaccatgtacgtgcattgtgaacggatttgcttggtctgcaaatgcggacacactattatgta |
25400977 |
T |
|
| Q |
664 |
catttgccatcatcgaagttggcatacc |
691 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
25400978 |
gatttgccatcatcgaagttggcatacc |
25401005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 467 - 691
Target Start/End: Complemental strand, 21292125 - 21291897
Alignment:
| Q |
467 |
acacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtag |
566 |
Q |
| |
|
|||| |||||||||||||| || |||||| | ||||||| ||| ||| |||||| |||| ||| ||| |||| ||||||||||||||||||||| ||| | |
|
|
| T |
21292125 |
acactgtaccaatttgttgcgttaacaaactaaccatttcgtggttagtctcatccatttgttatctcaacacattcatcgaatctgttgttaatggtgg |
21292026 |
T |
|
| Q |
567 |
tagaatactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgc |
662 |
Q |
| |
|
|||| || | |||| ||||| ||| ||||||| |||||||||| ||| || ||||||| ||||| ||| |||| | | |||| ||||||||||| |
|
|
| T |
21292025 |
tagagtattccgaccaaaaatactataacttgaaggactatgtatgttgtgcatagtgaacggatttgcttggtctgaaaaaacggaagcactattatgt |
21291926 |
T |
|
| Q |
663 |
acatttgccatcatcgaagttggcatacc |
691 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
21291925 |
acatttgccatcatcgaagttggcatacc |
21291897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 3e-50; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 473 - 691
Target Start/End: Original strand, 11426770 - 11426992
Alignment:
| Q |
473 |
taccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtagtagaat |
572 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||| ||| |||||||||||| |||||| ||||||||| | || ||| ||||| | |
|
|
| T |
11426770 |
taccaatttgttgtgtcaacaaattaaccatttcgtgattactctcatccatgtgttgtcttaacaaattcattgaatctgttttcaacggtggtagagt |
11426869 |
T |
|
| Q |
573 |
actttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgcacattt |
668 |
Q |
| |
|
| || |||| |||||||||||||||||||||||||||| ||| |||||||||| ||||| ||| |||||| ||||||| ||||| ||||| |||||| |
|
|
| T |
11426870 |
atttcgaccaaaaatgctagaacttgagggactatgtatgttgtgcattgtgaacggatttgcttgatctgcaaatgcggaagcacttttatgtacattt |
11426969 |
T |
|
| Q |
669 |
gccatcatcgaagttggcatacc |
691 |
Q |
| |
|
||||||| |||||| ||||||| |
|
|
| T |
11426970 |
tccatcattgaagtttgcatacc |
11426992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 467 - 691
Target Start/End: Original strand, 16924474 - 16924701
Alignment:
| Q |
467 |
acacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtag |
566 |
Q |
| |
|
|||| |||||||||| ||||||||||||||| ||||||| ||| |||||||||| |||| |||||||||||| ||||||| ||| |||||| || ||| | |
|
|
| T |
16924474 |
acacggtaccaattttttgtgtcaacaaattaaccatttcgtggttactctcatccatttgttgtcttaacaaattcatc-aatgtgttgtcaacggtgg |
16924572 |
T |
|
| Q |
567 |
tagaatactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgc |
662 |
Q |
| |
|
|||| || | |||| |||||||||||||||||||||||||||||||| |||||||||| ||||| ||| |||| | | || | |||||| |||| |
|
|
| T |
16924573 |
tagagtattccgaccaaaaatgctagaacttgagggactatgtacgttgtgcattgtgaacggatttgcttggtctgtaaaaacgaaagcactactatgt |
16924672 |
T |
|
| Q |
663 |
acatttgccatcatcgaagttggcatacc |
691 |
Q |
| |
|
| ||||||||||||| ||| ||||||||| |
|
|
| T |
16924673 |
aaatttgccatcatcaaaggtggcatacc |
16924701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 550 - 696
Target Start/End: Original strand, 22927574 - 22927724
Alignment:
| Q |
550 |
tctgttgttaagggtagtagaatactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatg |
645 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||| | |||||||| ||||| ||| | |||| ||| |
|
|
| T |
22927574 |
tctgttgttaagggtggtagagtactttgaccgaaaatgctagaacttgagggaatatgtacgttgtgcactgtgaacggatttgcttggtgtgcaaatg |
22927673 |
T |
|
| Q |
646 |
cggacgcactattatgcacatttgccatcatcgaagttggcataccctatg |
696 |
Q |
| |
|
||| ||| ||||||||||||||||||| ||||||| ||||||||| |||| |
|
|
| T |
22927674 |
cggttgcattattatgcacatttgccattatcgaagatggcataccatatg |
22927724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 7e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 473 - 691
Target Start/End: Original strand, 22805682 - 22805904
Alignment:
| Q |
473 |
taccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtagtagaat |
572 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||| ||| ||||| |||||| ||||||||| |||| |||||| | ||||| | |
|
|
| T |
22805682 |
taccaatttgttgtgtcaacaaattaaccatttcgtgattactctcatctatttgttgtattaacaagttcatcgaacctgtcgttaagactggtagagt |
22805781 |
T |
|
| Q |
573 |
actttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgcacattt |
668 |
Q |
| |
|
| || |||| ||||||||||||||||| |||||||||| ||| |||||||||| ||||| ||| |||||| |||| |||||||||||||| |||||| |
|
|
| T |
22805782 |
atttcgaccaaaaatgctagaacttgaaggactatgtatgttgtgcattgtgaacggatttgcttggtctgcaaatgctgacgcactattatgtacattt |
22805881 |
T |
|
| Q |
669 |
gccatcatcgaagttggcatacc |
691 |
Q |
| |
|
| ||| ||||||||||||||||| |
|
|
| T |
22805882 |
gtcattatcgaagttggcatacc |
22805904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 615 - 691
Target Start/End: Complemental strand, 24924971 - 24924895
Alignment:
| Q |
615 |
attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgcacatttgccatcatcgaagttggcatacc |
691 |
Q |
| |
|
|||||||||| ||||| ||| |||||| ||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
24924971 |
attgtgaacggatttgcttggtctgcaaatgcggacgcactattatgtgcatttgtcatcatcgaagttggcatacc |
24924895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 92; Significance: 3e-44; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 467 - 691
Target Start/End: Original strand, 34390 - 34618
Alignment:
| Q |
467 |
acacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtag |
566 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| ||||||||||| |||||||||| |||| |||||||||||| ||||||| |||||||||| || | | |
|
|
| T |
34390 |
acacggtaccaatttgttgtgttaacaaattaaccattttgtggttactctcatccatttgttgtcttaacaaattcatcaaatctgttgtcaacattgg |
34489 |
T |
|
| Q |
567 |
tagaatactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgc |
662 |
Q |
| |
|
||| || | |||| ||||||||||||||||||||||||||||| || |||||||||| ||||| || |||||| || |||||||||||||| |
|
|
| T |
34490 |
tagggtattccgaccaaaaatgctagaacttgagggactatgtacattgtgcattgtgaacggatttgcttaatctgcaaatctagacgcactattatgt |
34589 |
T |
|
| Q |
663 |
acatttgccatcatcgaagttggcatacc |
691 |
Q |
| |
|
||||| ||||||||||||||||||||||| |
|
|
| T |
34590 |
acattggccatcatcgaagttggcatacc |
34618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 4e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 472 - 696
Target Start/End: Original strand, 22262987 - 22263215
Alignment:
| Q |
472 |
gtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtagtagaa |
571 |
Q |
| |
|
|||||||||||||| || |||||||| ||||| | ||| |||||||||| |||| |||||||||||| ||||||||||| |||||| || ||| ||||| |
|
|
| T |
22262987 |
gtaccaatttgttgcgttaacaaattaaccatatcgtggttactctcatccatttgttgtcttaacaaattcatcgaatttgttgtcaacggtggtagag |
22263086 |
T |
|
| Q |
572 |
tactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgcacatt |
667 |
Q |
| |
|
|| | ||| || ||||||||||||||||||||||||||||| || ||||||| ||||| |||| ||||| | |||||||||||||||| ||| |
|
|
| T |
22263087 |
tattccaaccaaatatgctagaacttgagggactatgtacgttgtgcatggtgaacggatttgcttgtcctgcaaaaacggacgcactattatgtacacc |
22263186 |
T |
|
| Q |
668 |
tgccatcatcgaagttggcataccctatg |
696 |
Q |
| |
|
||||||| |||||||||| ||||| |||| |
|
|
| T |
22263187 |
tgccatcgtcgaagttggtataccatatg |
22263215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 473 - 641
Target Start/End: Complemental strand, 12149783 - 12149611
Alignment:
| Q |
473 |
taccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtagtagaat |
572 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||||| ||||||||||||| |||| |||||||||||| ||||| |||||||| |||||| | ||||| | |
|
|
| T |
12149783 |
taccgatttgttgtgtcaataaattaaccatttcatgattactctcatccatttgttgtcttaacaagttcatagaatctgtcgttaagactggtagagt |
12149684 |
T |
|
| Q |
573 |
actttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgca |
641 |
Q |
| |
|
| || |||| |||||||||||||||||| ||||||||| ||| |||||||||| ||||| ||| |||||| |
|
|
| T |
12149683 |
atttcgaccaaaaatgctagaacttgagagactatgtatgttgtgcattgtgaacggatttgcttggtctgca |
12149611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0056 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: scaffold0056
Description:
Target: scaffold0056; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 472 - 691
Target Start/End: Complemental strand, 50870 - 50647
Alignment:
| Q |
472 |
gtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtagtagaa |
571 |
Q |
| |
|
|||||||||| |||||| |||||||| | ||| | || |||||||||| |||| ||||||||||| ||||||| |||||||| | || | | || || |
|
|
| T |
50870 |
gtaccaattttttgtgttaacaaattaatcatatcatggttactctcatccattttttgtcttaacaaattcatcaaatctgttatcaacgatggtggag |
50771 |
T |
|
| Q |
572 |
tactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgcacatt |
667 |
Q |
| |
|
|| | |||| || ||||||||||||||||||||||||||||| || ||||||| ||||| ||||||| || | ||||| ||||||||||| ||| | |
|
|
| T |
50770 |
tattccgaccaaatatgctagaacttgagggactatgtacgttgtgcatggtgaacggatttgcttgttctacaaaagcggatgcactattatgtacact |
50671 |
T |
|
| Q |
668 |
tgccatcatcgaagttggcatacc |
691 |
Q |
| |
|
||||||| | |||||||||||||| |
|
|
| T |
50670 |
tgccatcgttgaagttggcatacc |
50647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0056; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 472 - 691
Target Start/End: Complemental strand, 55971 - 55748
Alignment:
| Q |
472 |
gtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtagtagaa |
571 |
Q |
| |
|
|||||||||| |||||| |||||||| | ||| | || |||||||||| |||| ||||||||||| ||||||| |||||||| | || | | || || |
|
|
| T |
55971 |
gtaccaattttttgtgttaacaaattaatcatatcatggttactctcatccattttttgtcttaacaaattcatcaaatctgttatcaacgatggtggag |
55872 |
T |
|
| Q |
572 |
tactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgcacatt |
667 |
Q |
| |
|
|| | |||| || ||||||||||||||||||||||||||||| || ||||||| ||||| ||||||| || | ||||| ||||||||||| ||| | |
|
|
| T |
55871 |
tattccgaccaaatatgctagaacttgagggactatgtacgttgtgcatggtgaacggatttgcttgttctacaaaagcggatgcactattatgtacact |
55772 |
T |
|
| Q |
668 |
tgccatcatcgaagttggcatacc |
691 |
Q |
| |
|
||||||| | |||||||||||||| |
|
|
| T |
55771 |
tgccatcgttgaagttggcatacc |
55748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 5e-27; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 472 - 691
Target Start/End: Complemental strand, 18377554 - 18377331
Alignment:
| Q |
472 |
gtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtagtagaa |
571 |
Q |
| |
|
|||||||||||||| || |||||||| | |||||| | |||||||||| ||| |||||||||||| ||||||||||| |||||| | ||| ||||| |
|
|
| T |
18377554 |
gtaccaatttgttgcgttaacaaattaagcattttaaggttactctcatctatttgttgtcttaacaaattcatcgaatttgttgtctacggtggtagag |
18377455 |
T |
|
| Q |
572 |
tactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgcacatt |
667 |
Q |
| |
|
|| | |||| |||||||||||||||||||||||||||||||| |||||||||| ||||| ||| |||| | | ||| ||||||||||| ||||| |
|
|
| T |
18377454 |
tattccgaccaaaaatgctagaacttgagggactatgtacgttgtgcattgtgaacggatttgcttggtctgtaaaaaaggaagcactattatgtacatt |
18377355 |
T |
|
| Q |
668 |
tgccatcatcgaagttggcatacc |
691 |
Q |
| |
|
|| ||| | || ||||||||||| |
|
|
| T |
18377354 |
tgacattagtgacgttggcatacc |
18377331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 467 - 614
Target Start/End: Complemental strand, 23011596 - 23011449
Alignment:
| Q |
467 |
acacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtag |
566 |
Q |
| |
|
|||| ||| ||||||||||||| ||| |||| ||||| | ||| |||||||||| |||| |||||||||||| ||||||| ||| |||||| || ||| | |
|
|
| T |
23011596 |
acacggtatcaatttgttgtgttaacgaattaaccatatcgtggttactctcatccatttgttgtcttaacaaattcatcaaatatgttgtcaacggtgg |
23011497 |
T |
|
| Q |
567 |
tagaatactttgaccgaaaatgctagaacttgagggactatgtacgtt |
614 |
Q |
| |
|
| || || | |||| || ||| || |||||||||||||||||||||| |
|
|
| T |
23011496 |
tcgactattccgaccaaatatgatataacttgagggactatgtacgtt |
23011449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 642 - 691
Target Start/End: Complemental strand, 17297123 - 17297074
Alignment:
| Q |
642 |
gatgcggacgcactattatgcacatttgccatcatcgaagttggcatacc |
691 |
Q |
| |
|
||||| |||||| ||||||||| |||| |||||||| ||||||||||||| |
|
|
| T |
17297123 |
gatgcagacgcattattatgcaaattttccatcatcaaagttggcatacc |
17297074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 583 - 691
Target Start/End: Complemental strand, 77907 - 77795
Alignment:
| Q |
583 |
aaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgcacatttgccatcatcg |
678 |
Q |
| |
|
||||| ||||||||||||||||||||||| || || ||||||| ||||| ||| |||||| | |||| |||||||||| |||||| ||||||| | |
|
|
| T |
77907 |
aaaatactagaacttgagggactatgtacattgtgcatagtgaacggatttgcttggtctgcaaaaacggaagcactattatatacattttccatcattg |
77808 |
T |
|
| Q |
679 |
aagttggcatacc |
691 |
Q |
| |
|
||||||||||||| |
|
|
| T |
77807 |
aagttggcatacc |
77795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 686
Target Start/End: Complemental strand, 38207 - 38133
Alignment:
| Q |
615 |
attgtgaacgaatttgttt--gttctgcagatgcggacgcactattatgcacatttg-ccatcatcgaagttggc |
686 |
Q |
| |
|
|||||||||| |||||| | |||||||| ||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
38207 |
attgtgaacggatttgtcttggttctgcaaatgcggacgcactattatgtgcatttgttcatcatcgaagttggc |
38133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 467 - 537
Target Start/End: Complemental strand, 47217 - 47147
Alignment:
| Q |
467 |
acacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaac |
537 |
Q |
| |
|
|||| |||||||||| |||||| |||||||| ||||||| || || ||||||| |||| ||||||||||| |
|
|
| T |
47217 |
acactgtaccaatttattgtgttaacaaattaaccatttcatggttgctctcatccatttgttgtcttaac |
47147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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