View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14390_low_14 (Length: 327)
Name: NF14390_low_14
Description: NF14390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14390_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 311
Target Start/End: Complemental strand, 38882519 - 38882230
Alignment:
| Q |
20 |
ttgtttggttacctgaaccaatttggtgcgaaacaaattgaggaataaatcatcaataacccctggcttgtattcattctttggagctgctgcaactccc |
119 |
Q |
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| T |
38882519 |
ttgtttggttacctgaaccaatttggtgcgaaacaaattgaggaacaaatcatcaataacccctggcttgtattcactctttggagctgctgcaactccc |
38882420 |
T |
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| Q |
120 |
acctaattcaaattcaatcannnnnnnnnnnnnnnnnnnaaatttcataatcgcacacgaaaaacaatagcaaaatatgcaaaccgttttgggtcccgac |
219 |
Q |
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| T |
38882419 |
acctaattcaaattcaatcaacacacacacacacaca--aaatttcataatcgcacacgaaaaacaatagcaaaatatgcaaaccgttttgggtcccgac |
38882322 |
T |
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| Q |
220 |
gatgaagaggctgaaacgcagaactgacgtatacgaattccattagaacaaagcggtggaacaccaccaacaacaatacctaccgccttcat |
311 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38882321 |
gatgaagaggctgaaacgcagaactgacgtttacgaattccattagaacaaagcggtggaacaccaccaacaacaatacctaccgccttcat |
38882230 |
T |
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