View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14390_low_18 (Length: 229)
Name: NF14390_low_18
Description: NF14390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14390_low_18 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 22687567 - 22687790
Alignment:
| Q |
6 |
aaagacatggattgttttggtctctcactttttcaaccggattttcttatttgttcttgttataaagttttcggagaaaacccttctggatttggttgcc |
105 |
Q |
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| T |
22687567 |
aaagacatggattgttttggtctttcactttttcaaccagattttcttatatgttcttgttataaagtttttggagaaaacccttctggatttggttgcc |
22687666 |
T |
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| Q |
106 |
tttttatcaagaaaagtgctacgtcgattttggaaacaaattcttctgtaggaatagtgaaccttgtgcaagnnnnnnntcagcaagattcgatacttac |
205 |
Q |
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| T |
22687667 |
tttttatcaagaaaagtgctacgtcgattttggaaacaaattcttctgtaggaatagtgaaccttgtgcaagaaaaaaagcagcaagattcgatacttac |
22687766 |
T |
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| Q |
206 |
cttacatttagatgaagaagaacc |
229 |
Q |
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|||||||||||| ||||||||||| |
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| T |
22687767 |
cttacatttagacgaagaagaacc |
22687790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 22751501 - 22751278
Alignment:
| Q |
6 |
aaagacatggattgttttggtctctcactttttcaaccggattttcttatttgttcttgttataaagttttcggagaaaacccttctggatttggttgcc |
105 |
Q |
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||||||||||||||||||| ||| |||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22751501 |
aaagacatggattgttttgttctttcactttttcaaccagattttcttatatgttcttgttataaagtttttggagaaaacccttctggatttggttgcc |
22751402 |
T |
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| Q |
106 |
tttttatcaagaaaagtgctacgtcgattttggaaacaaattcttctgtaggaatagtgaaccttgtgcaagnnnnnnntcagcaagattcgatacttac |
205 |
Q |
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| T |
22751401 |
tttttatcaagaaaagtgctacgtcgattttggaaacaaattcttctgtaggaatagtgaaccttgtgcaagaaaaaaagcagcaagattcgatacttac |
22751302 |
T |
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| Q |
206 |
cttacatttagatgaagaagaacc |
229 |
Q |
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| T |
22751301 |
cttacatttagacgaagaagaacc |
22751278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 119
Target Start/End: Original strand, 45958066 - 45958179
Alignment:
| Q |
6 |
aaagacatggattgttttggtctctcactttttcaaccggattttcttatttgttcttgttataaagttttcggagaaaacccttctggatttggttgcc |
105 |
Q |
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||||||||||| ||||||||||||| || |||||||| |||||||| |||||||| | || |||||||| |||||||| || ||||| |||||||||| |
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| T |
45958066 |
aaagacatggacagttttggtctctctctatttcaaccagattttctcatttgttcattctacaaagtttttggagaaaatccatctggttttggttgcc |
45958165 |
T |
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| Q |
106 |
tttttatcaagaaa |
119 |
Q |
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||||| |||||||| |
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| T |
45958166 |
tttttgtcaagaaa |
45958179 |
T |
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