View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14390_low_4 (Length: 469)
Name: NF14390_low_4
Description: NF14390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14390_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 331
Target Start/End: Complemental strand, 43516643 - 43516327
Alignment:
| Q |
11 |
cagaggggtgatgagcaagcaagagagaatcgaagagaaagggtgtaaaggaaggaccccacagcagaaaaaggaataaacaggctgtgaaggatgcatt |
110 |
Q |
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| T |
43516643 |
cagagaggtgatgagcaagcaagagagaatcgaagagaaagggtgtaaaggaaggaccccacagcacaaaaaggaataaacaggctgtgaaggatgcatt |
43516544 |
T |
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| Q |
111 |
tcaccatatgattggtattagtattagtattagtatttgtccacaaacaaagcgagcgagtgagagctagctaggttggtttggtttcagtaataagcac |
210 |
Q |
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| T |
43516543 |
tcaccatatgattggtattagtattagtattagtatttgtccacaaacaaagcgagcgagtgagag----ctaggttggtttggtttcagtaataagcac |
43516448 |
T |
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| Q |
211 |
gcagcagatacaacgagacaaccaacatgagcttcttaccaacaagtagaagtggaaagaaggggtctctccctgtgtcaaccaaaaccaaattaggaga |
310 |
Q |
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| T |
43516447 |
gcagcagatacaacgagacaaccaacatgagcttcttaccaacaagtagaagtggaaagaaggggtctctccctgtgtcaaccaaaaccaaattaggaga |
43516348 |
T |
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| Q |
311 |
tgctgctgatgcagtcgcagc |
331 |
Q |
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| T |
43516347 |
tgctgctgatgcagtcgcagc |
43516327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 356 - 453
Target Start/End: Complemental strand, 43516317 - 43516220
Alignment:
| Q |
356 |
ctttattcgcagacgcctatcaacatcctccctcaacaacaacacccctacagaaacaactaataataaatggtcgtcatttattcccagatccaagt |
453 |
Q |
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| T |
43516317 |
ctttattcgcagacgcctatcaacatcctccctcaaaaacaacacctctacagaaacaactaataataaatggtcgtcatttattcccagatccaagt |
43516220 |
T |
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