View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14390_low_5 (Length: 435)
Name: NF14390_low_5
Description: NF14390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14390_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 3 - 416
Target Start/End: Original strand, 10034068 - 10034481
Alignment:
| Q |
3 |
acccaagtatctaatagactatgttgagcagtaaagcataggattcattttgattgcctactaggttaagataaggccttattggaatattctagtattt |
102 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10034068 |
acccaagtatctaagggactatgttgagcagtaaagcataggattccttttgattgcctactaggttaagataaggccttagtggaatattctagtattt |
10034167 |
T |
|
| Q |
103 |
ccaccagctgtttgaccgttaggccacaactgtagcagtagccacgactgtcctttaaggatgagtcacctatgtaatattcccctatatatattctacc |
202 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10034168 |
ccaccagctgtgtgaccgttaggccacagctgtagcagtagccaggactttcctttaaggatgagtcacccatgtaatattcccctatatatattctacc |
10034267 |
T |
|
| Q |
203 |
atctaatgaaataaaggcatcaatcattatcaagaaagttagcttagtcagtagcttattttgttctttctctcttttcattatcaaatccctttcacta |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10034268 |
atctaatgaaataaaggcatcaatcattatcatgaaagttagcttagtcagtagcttattttgttctttctctcttttcattatcaaatccctttcactg |
10034367 |
T |
|
| Q |
303 |
gtgctttcatttgtttgtaaccatgagctcaaatgactcacctgacatagcagaaaccttgaaacaaatcctacgaaatccacagtcctgtcaaaatgat |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| || |
|
|
| T |
10034368 |
gtgctttcatttgtttgtaaccatgagctcaaatgactcacctgacatagcagaaaccttgaaacaaatcctacgaaatcaacagtcctgccaaaatcat |
10034467 |
T |
|
| Q |
403 |
atcagtaacctatc |
416 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
10034468 |
atcaataacctatc |
10034481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 39606621 - 39606806
Alignment:
| Q |
20 |
actatgttgagcagtaaagcataggattcattttgattgcctactaggttaagataaggccttattggaatattctagtatttccaccagctgtttgacc |
119 |
Q |
| |
|
||||||| || |||||||||||||||| | || | ||||||| |||| |||||||||||| ||||| ||||| ||||||||||||| ||| |||| |
|
|
| T |
39606621 |
actatgtggaccagtaaagcataggataccttgt--ttgcctattaggaatggataaggccttagtggaacattcttgtatttccaccagttgtaggacc |
39606718 |
T |
|
| Q |
120 |
gttaggccacaactgtagcagtagccacgactgtcctttaaggatgagtcacctatgtaatattcccctatatatattctaccatctaa |
208 |
Q |
| |
|
|||||| ||| ||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||| | ||||||||||| |
|
|
| T |
39606719 |
gttaggatacagctgtagcagtagccaagactgtcctttaaggatgagtcactattgtattattcccctatatat-tactaccatctaa |
39606806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 374
Target Start/End: Original strand, 39606863 - 39606955
Alignment:
| Q |
283 |
ttatcaaatccc-tttcactagtgctttcatttgtttgtaaccatgagctcaaatgactcacctgacatagcagaaaccttgaaacaaatcct |
374 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||| |||||||||||||| | |||||||| |||||| |||||| |||||||||| |
|
|
| T |
39606863 |
ttatcaaatcccctttcactggtgctttcatttgtttgctaccatgagctcaaacaaatcacctgatgtagcagcaaccttacaacaaatcct |
39606955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University