View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14390_low_8 (Length: 384)
Name: NF14390_low_8
Description: NF14390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14390_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 45048928 - 45049231
Alignment:
| Q |
18 |
atcaattatcactctcatcaaatcagcaaagaaatattagaaattcactcttcttcccaattttaaaatgatacttcaatcaagtatatggatttaaatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45048928 |
atcaattatcactctcatcaaatcagcaaagaaaaattagaaattcactcttcttcccaattttaaaatgatacttcaaccaagtatatggatttaaatg |
45049027 |
T |
|
| Q |
118 |
atgtacaattttttggttagctcttaattttttaaagaagcatattggacacatctctttcttttggttttgttattagtgattctcctttctttaaatt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45049028 |
atgtacaattttttggttagctcttaattttttaaagaagcatattgcacacatctctttcttttggttttgttattagtgattctcctttctttaaatt |
45049127 |
T |
|
| Q |
218 |
ggtctttcaatttgattttgttatttgtaccttatttcaatttggtata-----------tatttgtaccttgattttgtgatggatatgtatacttcac |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45049128 |
ggtctttcaatttgattttgttatttgtaccttatttcaatttggtatatatttgtaccttatttgtaccttgattttgtgatggatatgtatacttcat |
45049227 |
T |
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| Q |
307 |
tata |
310 |
Q |
| |
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|||| |
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| T |
45049228 |
tata |
45049231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 45049277 - 45049342
Alignment:
| Q |
303 |
tcactatagcaattcaaagtatcatcttgcttatgtgctatgatcaatgaaatatattagcatgat |
368 |
Q |
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| T |
45049277 |
tcactatagcaattcaaagtatcatcttgcttatgtgctatgatcaatgaaatatattggcatgat |
45049342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 25573640 - 25573705
Alignment:
| Q |
303 |
tcactatagcaattcaaagtatcatcttgcttatgtgctatgatcaatgaaatatattagcatgat |
368 |
Q |
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| T |
25573640 |
tcactagagcaattaaaagtatcatcttgcttatgtgctatgatcaatgaaatatattagcatgat |
25573705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 26008181 - 26008246
Alignment:
| Q |
303 |
tcactatagcaattcaaagtatcatcttgcttatgtgctatgatcaatgaaatatattagcatgat |
368 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26008181 |
tcactagagcaattaaaagtatcatcttgcttatgtgctatgatcaatgaaatatattagcatgat |
26008246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 310 - 368
Target Start/End: Original strand, 26126574 - 26126632
Alignment:
| Q |
310 |
agcaattcaaagtatcatcttgcttatgtgctatgatcaatgaaatatattagcatgat |
368 |
Q |
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||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26126574 |
agcaattaaaagtatcatcttgcttatttgctatgatcaatgaaatatattagcatgat |
26126632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 34985215 - 34985254
Alignment:
| Q |
185 |
ttttgttattagtgattctcctttctttaaattggtcttt |
224 |
Q |
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| T |
34985215 |
ttttgttattagtgattttcctttctttcaattggtcttt |
34985254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 10671490 - 10671442
Alignment:
| Q |
185 |
ttttgttattagtgattctcctttctttaaattggtctttcaatttgat |
233 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||| ||||||| |
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| T |
10671490 |
ttttgttatttgtgattctcctttctttcaattggtctttgtatttgat |
10671442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 34026903 - 34026942
Alignment:
| Q |
185 |
ttttgttattagtgattctcctttctttaaattggtcttt |
224 |
Q |
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||||||||||||||||| |||||||||| ||||||||||| |
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| T |
34026903 |
ttttgttattagtgattttcctttctttcaattggtcttt |
34026942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 34025981 - 34026013
Alignment:
| Q |
129 |
tttggttagctcttaattttttaaagaagcata |
161 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
34025981 |
tttggttagctcttaatttttgaaagaagcata |
34026013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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