View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14390_low_9 (Length: 382)
Name: NF14390_low_9
Description: NF14390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14390_low_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 187 - 382
Target Start/End: Original strand, 38882054 - 38882250
Alignment:
| Q |
187 |
aatgcaaaactctcttgattggtaaatgtccaagttcaaattctctgtcaaaacaattaacatacttttcattttatggttaaaaaacaattaaccggta |
286 |
Q |
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| T |
38882054 |
aatgcaaaactctcttgattggtaaatgtccaagttcaaattctctgtcaaaacaattaacatacttttcattttatggttaaaaaacaattaaccggta |
38882153 |
T |
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| Q |
287 |
agaggtgaccttagcgaatacggagag-ttaaagtgaagtgtggttagttagtttagttgttacagttagaaagaaatgaaggcggtaggtattgtt |
382 |
Q |
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| T |
38882154 |
agcggtgaccttagcgaatacggagagtttaaagtgaagtgcggttagttagtttagttgttacagttagaaagaaatgaaggcggtaggtattgtt |
38882250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 10 - 146
Target Start/End: Original strand, 38881924 - 38882061
Alignment:
| Q |
10 |
aagaatatgtgaaaatgaaaattaactcatagtttaacaacagtaatatatctcatggattaatgtgttagaaagactaattttacaataaattagatac |
109 |
Q |
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| T |
38881924 |
aagaaaatgtgaaaatgaaaattaactcatagtttaacaacagtaatatatctcatggattaatgtgttagaacgactaattttacaataaattagatac |
38882023 |
T |
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| Q |
110 |
aaattagcagaaaagta-ttttttcaacataattcaaa |
146 |
Q |
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| T |
38882024 |
aaattagcagaaaagtatttttttcaacataatgcaaa |
38882061 |
T |
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