View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14391_high_3 (Length: 323)

Name: NF14391_high_3
Description: NF14391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14391_high_3
NF14391_high_3
[»] chr4 (15 HSPs)
chr4 (6-289)||(27506263-27506546)
chr4 (6-289)||(27479176-27479461)
chr4 (3-289)||(27486236-27486524)
chr4 (34-232)||(27500938-27501137)
chr4 (155-276)||(27526881-27527001)
chr4 (23-68)||(27468898-27468943)
chr4 (23-99)||(27489645-27489721)
chr4 (6-63)||(27503442-27503499)
chr4 (6-67)||(27524041-27524102)
chr4 (6-65)||(27556962-27557021)
chr4 (6-68)||(27514410-27514472)
chr4 (23-63)||(27476133-27476173)
chr4 (165-228)||(27473128-27473191)
chr4 (23-93)||(27526699-27526772)
chr4 (23-67)||(27508442-27508486)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 6 - 289
Target Start/End: Original strand, 27506263 - 27506546
Alignment:
Q  6 tggacatcatcaccatgataatgaagaaaacatgtctgaaacatgtttacaaaattatgaagtgatagttaatgcatgaacaaatatgaggttgaatttg 105  Q
    ||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27506263 tggacatcagcactttgataatgaagaaaacatgtctgaaacatgtttacaaaattatgaagtgatagttaatgcatgaacaaatatgaggttgaatttg 27506362  T
Q  106 aaagggtggtgtacaatctttagacaacccacatgctatatcatcttatcctttaactctttcaaacaataatttatcttggaattaggtttgcaaagaa 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27506363 aaagggtggtgtacaatctttagacaacccacatgctatatcatcttatcctttaattctttcaaacaataatttatcttggaattaggtttgcaaagaa 27506462  T
Q  206 tctcagtaactataaatatacttacaaattggcttcaaacacaacacaagtcgttgacatcctcaagtattagttacattcttc 289  Q
    | | ||||||||||||||||||||||||| ||| |||||||||||||||||| |||  ||||| |||||||||||| |||||||    
T  27506463 tattagtaactataaatatacttacaaataggcatcaaacacaacacaagtcattggtatcctaaagtattagttagattcttc 27506546  T

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Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 6 - 289
Target Start/End: Complemental strand, 27479461 - 27479176
Alignment:
Q  6 tggacatcatcaccatgataatgaagaaaacatgtctgaaacatgtttacaaaattatgaagtgatagttaatgcatgaacaaatatgaggttgaatttg 105  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||  ||||||||||||||| |||    
T  27479461 tggacatcagcaccatgataatgaagaaaacatgtctgaaacatgtttacacaattatgaagtgatagttaatagatgataaaatatgaggttgaacttg 27479362  T
Q  106 aaagggtggtg-tacaatctttagacaac-ccacatgctatatcatcttatcctttaactctttcaaacaataatttatcttggaattaggtttgcaaag 203  Q
    ||||||||||| |||||| |||||||||| ||||||| |||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||    
T  27479361 aaagggtggtggtacaatgtttagacaacaccacatggtatatcatcttatcctttaactctttcaagaaataatttagcttggaattaggtttgcaaag 27479262  T
Q  204 aatctcagtaactataaatatacttacaaattggcttcaaacacaacacaagtcgttgacatcctcaagtattagttacattcttc 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27479261 aatctcagtaactataaatatacttacaaattggcttcaaacacaacacaagtcgttgacatcctcaagtattagttacattcttc 27479176  T

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Target: chr4; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 3 - 289
Target Start/End: Complemental strand, 27486524 - 27486236
Alignment:
Q  3 agatggacatcatcaccatgataatgaagaaaacatgtctgaaacatgtttacaaaattatgaagtgatagttaatgcatgaacaaatatgaggttgaat 102  Q
    |||||||||||| |||  | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||    
T  27486524 agatggacatcaacactttaataatgaagaaaacatgtctgaaacatgtttacacaattatgaagtgatagttaatggatgaaaaaatatgaggttgaat 27486425  T
Q  103 ttgaaagggtggtg-tacaatctttagacaac-ccacatgctatatcatcttatcctttaactctttcaaacaataatttatcttggaattaggtttgca 200  Q
    |||||||||||||| || ||| |||||||||| ||||||| |||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||    
T  27486424 ttgaaagggtggtggtataatgtttagacaacaccacatggtatatcatcttatcctttaactctttcaagaaataatttagcttggaattaggtttgca 27486325  T
Q  201 aagaatctcagtaactataaatatacttacaaattggcttcaaacacaacacaagtcgttgacatcctcaagtattagttacattcttc 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27486324 aagaatctcagtaactataaatatacttacaaattggcttcaaacacaacacaagtcgttgacatcctcaagtattagttacattcttc 27486236  T

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Target: chr4; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 34 - 232
Target Start/End: Original strand, 27500938 - 27501137
Alignment:
Q  34 aacatgtctgaaacatgtttacaaaattatgaagtgatagttaatgcatgaacaaatatgaggttgaatttgaaagggtggtgtacaatctttagacaac 133  Q
    ||||||||||||||||| ||||| |||||||||||  |  |||||||||||||||||| | ||||| | |||||||||||| |||||||||| | |||||    
T  27500938 aacatgtctgaaacatgcttacacaattatgaagtacttcttaatgcatgaacaaataagtggttgcagttgaaagggtggggtacaatcttaaaacaac 27501037  T
Q  134 -ccacatgctatatcatcttatcctttaactctttcaaacaataatttatcttggaattaggtttgcaaagaatctcagtaactataaatatacttacaa 232  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||| ||||||| |||| |||||||||||||||| ||||    
T  27501038 accacatgctatatcatcttatcctttaactctttcaaacaataatttagcttgtaattgggtttccaaagaacctcaataactataaatatactaacaa 27501137  T

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Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 276
Target Start/End: Original strand, 27526881 - 27527001
Alignment:
Q  155 cctttaactctttcaaacaataatttatcttggaattaggtttgcaaagaatctcagtaactataaatatacttacaaattggctt-caaacacaacaca 253  Q
    ||||||||||||| ||||||||||||| ||||||||||||||| || |||| |||||||||||||||||||||||||| ||  ||| |||| | ||||||    
T  27526881 cctttaactcttttaaacaataatttagcttggaattaggtttccagagaacctcagtaactataaatatacttacaattt--cttccaaaaataacaca 27526978  T
Q  254 agtcgttgacatcctcaagtatt 276  Q
    |||| ||| |||| |||||||||    
T  27526979 agtcattggcatcgtcaagtatt 27527001  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 27468943 - 27468898
Alignment:
Q  23 ataatgaagaaaacatgtctgaaacatgtttacaaaattatgaagt 68  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  27468943 ataatgaagaaaacatgtctgaagcatgtttacaaaattatgaagt 27468898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 27489645 - 27489721
Alignment:
Q  23 ataatgaagaaaacatgtctgaaacatgtttacaaaattatgaagtgatagttaatgcatgaacaaatatgaggttg 99  Q
    |||||||||||||||||||| || ||||||||||||||||  ||||   | |||||||||||| |||||||||||||    
T  27489645 ataatgaagaaaacatgtctaaagcatgtttacaaaattacaaagtaccaattaatgcatgaataaatatgaggttg 27489721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 27503442 - 27503499
Alignment:
Q  6 tggacatcatcaccatgataatgaagaaaacatgtctgaaacatgtttacaaaattat 63  Q
    ||||||||| ||  || ||||||||||||||||||||||| |||||||||||||||||    
T  27503442 tggacatcaacattatcataatgaagaaaacatgtctgaagcatgtttacaaaattat 27503499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 27524041 - 27524102
Alignment:
Q  6 tggacatcatcaccatgataatgaagaaaacatgtctgaaacatgtttacaaaattatgaag 67  Q
    ||||||||| ||  || ||||||||||||||||||||||| ||||||||| |||||||||||    
T  27524041 tggacatcagcattatcataatgaagaaaacatgtctgaagcatgtttacgaaattatgaag 27524102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 27557021 - 27556962
Alignment:
Q  6 tggacatcatcaccatgataatgaagaaaacatgtctgaaacatgtttacaaaattatga 65  Q
    |||| |||| ||| || |||||||||||||||||||| || |||||||||||||||||||    
T  27557021 tggaaatcaacactatcataatgaagaaaacatgtctaaagcatgtttacaaaattatga 27556962  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 27514410 - 27514472
Alignment:
Q  6 tggacatcatcaccatgataatgaagaaaacatgtctgaaacatgtttacaaaattatgaagt 68  Q
    ||||||||| ||  || |||||| ||||||||||||| || ||||||||||||||||||||||    
T  27514410 tggacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagt 27514472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 27476173 - 27476133
Alignment:
Q  23 ataatgaagaaaacatgtctgaaacatgtttacaaaattat 63  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  27476173 ataatgaagaaaacatgtctgaagcatgcttacaaaattat 27476133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 228
Target Start/End: Complemental strand, 27473191 - 27473128
Alignment:
Q  165 tttcaaacaataatttatcttggaattaggtttgcaaagaatctcagtaactataaatatactt 228  Q
    ||||||| ||||||||| ||||||||| | ||| || |||| |||| |||||||||||||||||    
T  27473191 tttcaaataataatttagcttggaattggattttcagagaacctcaataactataaatatactt 27473128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 27526699 - 27526772
Alignment:
Q  23 ataatgaagaaaa-catgtctgaaacatgtttacaaaattatgaagtgatagt--taatgcatgaacaaatatg 93  Q
    ||||||||||||| ||||||||||  |||||| ||||||||||||||  ||||  |||||||||| ||||||||    
T  27526699 ataatgaagaaaaacatgtctgaacaatgttttcaaaattatgaagtactagttataatgcatgatcaaatatg 27526772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 27508442 - 27508486
Alignment:
Q  23 ataatgaagaaaacatgtctgaaacatgtttacaaaattatgaag 67  Q
    ||||||||||||||||||||  | |||||||| ||||||||||||    
T  27508442 ataatgaagaaaacatgtcttcagcatgtttataaaattatgaag 27508486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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