View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14391_low_1 (Length: 455)
Name: NF14391_low_1
Description: NF14391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14391_low_1 |
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| [»] scaffold0565 (2 HSPs) |
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| [»] scaffold0808 (1 HSPs) |
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Alignment Details
Target: scaffold0565 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 3942 - 4195
Alignment:
| Q |
19 |
cttgaaagataccataaacatttacataaatgaatcttgcatcaggaagttggttattgagttgatcaacaagagatcttaatccattgttgaataattg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3942 |
cttgaaagataccataaacatttacataaatgaatcttgcatcaggaagttggttattgagttgatcaacaagagatcttaatccattgttgaataattg |
4041 |
T |
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| Q |
119 |
atttgcagaattgattcttgctacacatgttctaccatctgggctgttttgggccaatgcatttggggtgcaacctatttgaccaactccaaataacgcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4042 |
atttgcagaattgattcttgctacacatgttctaccatctgggctgttttgggccaatgcatttggggtgcaacctatttgaccaactccaaataacgcc |
4141 |
T |
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| Q |
219 |
attttccttgccccataattatataaaatctgaatcacaaacacaaaaattgaa |
272 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4142 |
attttccttgccccataattatataaaatctgaattacaaacacaaaaattgaa |
4195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0565; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 319 - 437
Target Start/End: Original strand, 4197 - 4315
Alignment:
| Q |
319 |
gtgacataatatgagccattagatcaattcattataacggttgatatttgatgtaaccctagtgttaacggattctaactcatataatgcatatagaaaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4197 |
gtgacataatatgagccattagatcaattcattataacggttgatatttggtgtaaccctagtgttaacggattctaacttatataatgcatatagaaaa |
4296 |
T |
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| Q |
419 |
agagtctgaccctaagttg |
437 |
Q |
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| T |
4297 |
agagtctgaccctgagttg |
4315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 19 - 269
Target Start/End: Complemental strand, 7615897 - 7615647
Alignment:
| Q |
19 |
cttgaaagataccataaacatttacataaatgaatcttgcatcaggaagttggttattgagttgatcaacaagagatcttaatccattgttgaataattg |
118 |
Q |
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||||||| ||||||||| ||||||||| |||||||||||||| | ||| | || |||||||||| |||||||||| | ||||| ||||| |||||||| |
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| T |
7615897 |
cttgaaaaataccataagtatttacatagatgaatcttgcatccgtaagctcattgttgagttgattaacaagagatttcaatccgttgttaaataattg |
7615798 |
T |
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| Q |
119 |
atttgcagaattgattcttgctacacatgttctaccatctgggctgttttgggccaatgcatttggggtgcaacctatttgaccaactccaaataacgcc |
218 |
Q |
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| T |
7615797 |
gtttgcagaatttattctttcaacacaagtggtaccatctggactgttttgagctaattcatttggactgcaacctatttgaccaatcccaaataaagcc |
7615698 |
T |
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| Q |
219 |
attttccttgccccataattatataaaatctgaatcacaaacacaaaaatt |
269 |
Q |
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||||||||||| ||||| ||||| ||||||| | |||||||||||| |||| |
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| T |
7615697 |
attttccttgctccatagttatacaaaatctaagtcacaaacacaacaatt |
7615647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 36361761 - 36362007
Alignment:
| Q |
19 |
cttgaaagataccataaacatttacataaatgaatcttgcatcaggaagttggttattgagttgatcaacaagagatcttaatccattgttgaataattg |
118 |
Q |
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||||||| ||||||||| |||||| || || | | ||| ||||||||| ||||| || | |||||||||||| | | ||| |||||||||| ||| |
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| T |
36361761 |
cttgaaaaataccataagaatttacgtagataacttttgaatcaggaagctggttgttaaactgatcaacaagacctttcaatttgttgttgaatatttg |
36361860 |
T |
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| Q |
119 |
atttgcagaattgattcttgctacacatgttctaccatctgggctgttttgggccaatgcatttggggtgcaacctatttgaccaactccaaataacgcc |
218 |
Q |
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| T |
36361861 |
gtttgctgaattgatttcttccacacatgttacgccatctgcgctccttgtagccaattcatttgggctgcagcctatttgaccaatcccaaatagtacc |
36361960 |
T |
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| Q |
219 |
attttccttgccccataattatataaaatctgaatcacaaacacaaa |
265 |
Q |
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||||||||||| || | ||||| | | ||||||||||||| ||||| |
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| T |
36361961 |
attttccttgctccgttgttataaagagtctgaatcacaaatacaaa |
36362007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 374
Target Start/End: Original strand, 21723378 - 21723432
Alignment:
| Q |
320 |
tgacataatatgagccattagatcaattcattataacggttgatatttgatgtaa |
374 |
Q |
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| T |
21723378 |
tgacataatatgaactcttagatcaattaattacaacggttgagatttgatgtaa |
21723432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 1614432 - 1614469
Alignment:
| Q |
326 |
aatatgagccattagatcaattcattataacggttgat |
363 |
Q |
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| T |
1614432 |
aatatgagccattggatcaattaattataacggttgat |
1614469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0808 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0808
Description:
Target: scaffold0808; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 5012 - 5064
Alignment:
| Q |
322 |
acataatatgagccattagatcaattcattataacggttgatatttgatgtaa |
374 |
Q |
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|||||||||||| ||||||||||| | |||||||||||| | ||||| ||||| |
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| T |
5012 |
acataatatgagtcattagatcaaataattataacggttaagatttggtgtaa |
5064 |
T |
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