View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14391_low_3 (Length: 352)
Name: NF14391_low_3
Description: NF14391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14391_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 45342665 - 45342999
Alignment:
| Q |
1 |
attcaagtagtcactgatgtctactatgttccagagttgaaaaataacttactgagtgtaggccagcttcaagaaaaaggattaactttacttatacaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45342665 |
attcaagtagtcactgatgtctactatgttccaaagttgaaaaataacttactgaatgtaggccaacttcaagaaaaaggattaactttacttatacaaa |
45342764 |
T |
|
| Q |
101 |
atggaacatgcaagttattccatccaagaagaggattgctcatgcaaacaaaaatgacggcaaatcgaatgtttgtgctgctggctagtgtggtacttca |
200 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45342765 |
atgaaacatgcaagttattccatcaaagaagaggattgttcatgcaaacaaaaatgacagcaaatcgaatgtttgtgctgctggctagtgtggtgcttca |
45342864 |
T |
|
| Q |
201 |
agagacctcaacgttcctacaattagctactgaagatagctcacaattgtggcatcgtagatttgggcacttgagttacaaaggtttgaggactttgcaa |
300 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45342865 |
agagacctcaacattcctacaattagctactgaagatagcttacaattgtggcatcgtagatttgggcacttgagttacaaaggtttgaggactttgcaa |
45342964 |
T |
|
| Q |
301 |
tataaacagatggtgaagggccttccacttgttaa |
335 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
45342965 |
tataaacagatggtaaagggccttccacttgttaa |
45342999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University