View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14391_low_5 (Length: 295)
Name: NF14391_low_5
Description: NF14391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14391_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 41 - 295
Target Start/End: Original strand, 801058 - 801310
Alignment:
| Q |
41 |
catgcctcctacaacaaatgatctcaagtagtataactccatagctgaaaacatcaacttttgcagttattggtgcactccttaaccattcaggtgctat |
140 |
Q |
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| T |
801058 |
catgcctcctacaacaaatgatctcaagtagcataactccatagctgaaaacatcaacttttgcagttatcggtgcactccttaaccattcaggtgctat |
801157 |
T |
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| Q |
141 |
gtaccttattgtccctctaaaatttgtacttattctggtttgatctttgttcaaaagcttggaaagtccaaaatctgcaatctttgcaatatgattagca |
240 |
Q |
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| T |
801158 |
gtaccctattgtccctctaaaatttgtacttgttctggtttgatctttgttcaaaagcttggaaagtccaaaatctgcaatctttgcaatatgattagca |
801257 |
T |
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| Q |
241 |
tcaagtaacacattttgtggcttgatatcacaatatgtatgatctgcgtttcaca |
295 |
Q |
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| T |
801258 |
tcaagtaacacattttgtggcttgatatcaca--atgtatgatctgcgtttcaca |
801310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 270
Target Start/End: Complemental strand, 11041097 - 11041068
Alignment:
| Q |
241 |
tcaagtaacacattttgtggcttgatatca |
270 |
Q |
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| T |
11041097 |
tcaagtaacacattttgtggcttgatatca |
11041068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 11026394 - 11026366
Alignment:
| Q |
241 |
tcaagtaacacattttgtggcttgatatc |
269 |
Q |
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| T |
11026394 |
tcaagtaacacattttgtggcttgatatc |
11026366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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