View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14391_low_8 (Length: 230)
Name: NF14391_low_8
Description: NF14391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14391_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 213
Target Start/End: Complemental strand, 6351456 - 6351251
Alignment:
| Q |
8 |
acatcatcaagaatctcaaatctcaaattttcttgttattgaatggcaactcgtgtggtcccacaaaagataatcaagaatctccgtttcaaaaccacca |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6351456 |
acatcatcaagaatctcaaatctcaaattttcttgttattgaatggcaactcgtgtggtcccacaaaagatcatcaagaatctccgtttcaaaaccacca |
6351357 |
T |
|
| Q |
108 |
caaaaccattaaactcctcccatccttcggccaccgccgccgtcgcttcccttctcgaaagagaacaaccttctccaccacaaccgtcacactaacaacc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6351356 |
caaaaccattaaactcctcccatccttcggccaccgccgccgtcgcttcccttctcgaaagagaacaaccttctccaccacaaccgtcacaccaacaacc |
6351257 |
T |
|
| Q |
208 |
gtctta |
213 |
Q |
| |
|
||||| |
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|
| T |
6351256 |
atctta |
6351251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 213
Target Start/End: Complemental strand, 6336471 - 6336266
Alignment:
| Q |
8 |
acatcatcaagaatctcaaatctcaaattttcttgttattgaatggcaactcgtgtggtcccacaaaagataatcaagaatctccgtttcaaaaccacca |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6336471 |
acatcatcaagaatctcaaatctcaaattttcttgttattgaatggcaactcgtgtggtcccacaaaagatcatcaagaatctccgtttcaaaaccacca |
6336372 |
T |
|
| Q |
108 |
caaaaccattaaactcctcccatccttcggccaccgccgccgtcgcttcccttctcgaaagagaacaaccttctccaccacaaccgtcacactaacaacc |
207 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6336371 |
caaaaccattaaactcctcccatccttcggccaccgccgccgtcgcttcccttattgaaagagaacaaccttctccaccacaaccgtcacaccaacaacc |
6336272 |
T |
|
| Q |
208 |
gtctta |
213 |
Q |
| |
|
||||| |
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|
| T |
6336271 |
atctta |
6336266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 30 - 213
Target Start/End: Complemental strand, 6328891 - 6328708
Alignment:
| Q |
30 |
tcaaattttcttgttattgaatggcaactcgtgtggtcccacaaaagataatcaagaatctccgtttcaaaaccaccacaaaaccattaaactcctccca |
129 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6328891 |
tcaaaatttcttgtttttgaatggcaactcgtgtggtcccacaaaaaatcatcaagaatctccgtttcaaaaccaccacaaaaccattaaactcctacca |
6328792 |
T |
|
| Q |
130 |
tccttcggccaccgccgccgtcgcttcccttctcgaaagagaacaaccttctccaccacaaccgtcacactaacaaccgtctta |
213 |
Q |
| |
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|||||| ||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
6328791 |
tccttcagccaccgccaccgtcgcctccattctcgaaagagaacaaccttctccaccacaaccgtcacaccaacaaccatctta |
6328708 |
T |
|
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