View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_high_16 (Length: 549)
Name: NF14392_high_16
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 531
Target Start/End: Complemental strand, 1989801 - 1989272
Alignment:
| Q |
1 |
gtttatattaagatgttatgatttattcttgattgtattccatatatgcatgtctatagttctctgtctcccttgtttccaatgacaaaacattgcacta |
100 |
Q |
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| T |
1989801 |
gtttatattaagatgttatgatttattcttgattgtattccatatatgcatgtatatagttctctgtctcccttggttccaatgacaaaacattgcacta |
1989702 |
T |
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| Q |
101 |
accacaaatttaattaattctttgaatattttccattacctatattgtagcaaaattcgatttacattcatgaaaccaactgcatgatctgattatatcc |
200 |
Q |
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| T |
1989701 |
accacaaatttaattaattctttgaatattttccattacctatattgtagcaaaatttgatttacattcatgaaaccaactgcatgatctgattatatcc |
1989602 |
T |
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| Q |
201 |
catatttccttgttccaaattttattgtttcaatttcaaatcaaaggttggcctttaatttcactattagttaaagaaatgaaggctaggattttgagga |
300 |
Q |
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| T |
1989601 |
catatttccttgttccaatttttattgtttcaatttcaaatcaaaggttggcctttaatttcactattagttaaagaaatgaaggctaggattttgagga |
1989502 |
T |
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| Q |
301 |
cccataccatatgattattgctatctgtatttaaaaacaatgtgtgaactgggctactagttattcatataaactttgaattattttagcctggttagag |
400 |
Q |
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| T |
1989501 |
cccataccatatgattattgctttctgtatttgaaaacaatgtgtgaacaaggctactagttattcaaataaactttgaattattttagcctggttagag |
1989402 |
T |
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| Q |
401 |
tttatacatcttaatcagatcgcaccattaccatccttgttcatg-attcactcctaagtgtcaaagnnnnnnnctattttatctctcaacaagttttat |
499 |
Q |
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| T |
1989401 |
tttatacatcttgatcagatcgcaccattaccatccttgttcatgtattcactcctaagtgtcaaagtttttttctatttta--tctcaacaagttttat |
1989304 |
T |
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| Q |
500 |
ctttttaatcgaataaacttttaagcccctta |
531 |
Q |
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| T |
1989303 |
ctttttaatcgaataaacttttacgcccctta |
1989272 |
T |
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