View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14392_high_24 (Length: 442)

Name: NF14392_high_24
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14392_high_24
NF14392_high_24
[»] scaffold0036 (1 HSPs)
scaffold0036 (1-383)||(21382-21766)
[»] chr3 (23 HSPs)
chr3 (409-442)||(24087344-24087377)
chr3 (410-442)||(42801517-42801549)
chr3 (412-442)||(4759360-4759390)
chr3 (412-442)||(10015798-10015828)
chr3 (412-442)||(19897845-19897875)
chr3 (412-442)||(41392889-41392919)
chr3 (412-442)||(48902717-48902747)
chr3 (412-442)||(48904272-48904302)
chr3 (413-442)||(12906422-12906451)
chr3 (412-441)||(17699041-17699070)
chr3 (413-442)||(28875260-28875289)
chr3 (413-442)||(46845501-46845530)
chr3 (413-442)||(50433398-50433427)
chr3 (410-442)||(1111657-1111689)
chr3 (414-442)||(4759088-4759116)
chr3 (414-442)||(8321925-8321953)
chr3 (406-442)||(14428602-14428638)
chr3 (410-442)||(14428878-14428910)
chr3 (414-442)||(15996782-15996810)
chr3 (411-439)||(28673306-28673334)
chr3 (406-442)||(29454795-29454831)
chr3 (412-440)||(42755339-42755367)
chr3 (414-442)||(45513646-45513674)
[»] chr2 (20 HSPs)
chr2 (409-442)||(12890217-12890250)
chr2 (413-442)||(2199977-2200006)
chr2 (409-442)||(11201678-11201711)
chr2 (409-442)||(22182933-22182966)
chr2 (413-442)||(23083514-23083543)
chr2 (413-442)||(26322302-26322331)
chr2 (413-442)||(31751068-31751097)
chr2 (413-442)||(41422511-41422540)
chr2 (413-442)||(41494631-41494660)
chr2 (414-442)||(2060316-2060344)
chr2 (414-442)||(2200249-2200277)
chr2 (414-442)||(3095299-3095327)
chr2 (414-442)||(7116308-7116336)
chr2 (414-442)||(8912883-8912911)
chr2 (414-442)||(13215829-13215857)
chr2 (414-442)||(18374713-18374741)
chr2 (414-442)||(24345417-24345445)
chr2 (414-442)||(24345687-24345715)
chr2 (414-442)||(28566151-28566179)
chr2 (413-441)||(29830764-29830792)
[»] scaffold0163 (1 HSPs)
scaffold0163 (411-442)||(1455-1486)
[»] scaffold0020 (1 HSPs)
scaffold0020 (411-442)||(164211-164242)
[»] chr8 (18 HSPs)
chr8 (407-442)||(2152249-2152284)
chr8 (410-441)||(36408411-36408442)
chr8 (412-442)||(23688174-23688204)
chr8 (413-442)||(12802610-12802639)
chr8 (413-442)||(18111984-18112013)
chr8 (413-442)||(23487063-23487092)
chr8 (412-441)||(40784889-40784918)
chr8 (413-442)||(44580615-44580644)
chr8 (409-442)||(44888675-44888708)
chr8 (414-442)||(5162304-5162332)
chr8 (412-440)||(5774046-5774074)
chr8 (414-442)||(6050564-6050592)
chr8 (414-442)||(17069853-17069881)
chr8 (414-442)||(17578392-17578420)
chr8 (414-442)||(18641389-18641417)
chr8 (412-440)||(33980463-33980491)
chr8 (412-440)||(35179598-35179626)
chr8 (414-442)||(45283801-45283829)
[»] chr7 (14 HSPs)
chr7 (407-442)||(9140542-9140577)
chr7 (411-442)||(33381582-33381613)
chr7 (411-442)||(42541868-42541899)
chr7 (412-442)||(34012526-34012556)
chr7 (413-442)||(1574718-1574747)
chr7 (413-442)||(2290025-2290054)
chr7 (413-442)||(27813495-27813524)
chr7 (413-441)||(6799556-6799584)
chr7 (412-440)||(12930316-12930344)
chr7 (414-442)||(31581677-31581705)
chr7 (414-442)||(32118172-32118200)
chr7 (409-441)||(32759551-32759583)
chr7 (413-441)||(35888311-35888339)
chr7 (413-441)||(46415015-46415043)
[»] chr6 (15 HSPs)
chr6 (411-442)||(16122523-16122554)
chr6 (411-442)||(34915552-34915583)
chr6 (412-442)||(13321335-13321365)
chr6 (412-442)||(15498627-15498657)
chr6 (412-442)||(25045652-25045682)
chr6 (413-442)||(402630-402659)
chr6 (413-442)||(13901640-13901669)
chr6 (409-442)||(16272977-16273010)
chr6 (413-442)||(23604459-23604488)
chr6 (414-442)||(2090658-2090686)
chr6 (412-440)||(7772174-7772202)
chr6 (411-439)||(11200591-11200619)
chr6 (414-442)||(13866593-13866621)
chr6 (409-437)||(15967174-15967202)
chr6 (414-442)||(31091445-31091473)
[»] chr5 (15 HSPs)
chr5 (411-442)||(8949809-8949840)
chr5 (404-442)||(19571948-19571986)
chr5 (413-442)||(3028012-3028041)
chr5 (413-442)||(7940451-7940480)
chr5 (409-442)||(9020689-9020722)
chr5 (413-442)||(14435829-14435858)
chr5 (413-442)||(20142268-20142297)
chr5 (413-442)||(23260147-23260176)
chr5 (414-442)||(4976299-4976327)
chr5 (407-439)||(14571280-14571312)
chr5 (410-442)||(16127255-16127287)
chr5 (414-442)||(23286483-23286511)
chr5 (412-440)||(24857554-24857582)
chr5 (413-441)||(32964132-32964160)
chr5 (414-442)||(43060420-43060448)
[»] chr4 (25 HSPs)
chr4 (407-442)||(49373702-49373737)
chr4 (411-442)||(49793088-49793119)
chr4 (411-442)||(56432515-56432546)
chr4 (413-442)||(4415964-4415993)
chr4 (413-442)||(18872716-18872745)
chr4 (413-442)||(20455190-20455219)
chr4 (409-442)||(20747439-20747472)
chr4 (413-442)||(21265219-21265248)
chr4 (413-442)||(28501395-28501424)
chr4 (413-442)||(29508597-29508626)
chr4 (413-442)||(30523763-30523792)
chr4 (413-442)||(32899227-32899256)
chr4 (413-442)||(46949991-46950020)
chr4 (414-442)||(7698478-7698506)
chr4 (409-441)||(18882346-18882378)
chr4 (414-442)||(25124255-25124283)
chr4 (414-442)||(29520173-29520201)
chr4 (412-440)||(30050095-30050123)
chr4 (414-442)||(31937076-31937104)
chr4 (414-442)||(39670995-39671023)
chr4 (413-441)||(39797433-39797461)
chr4 (410-442)||(42528602-42528634)
chr4 (414-442)||(53564365-53564393)
chr4 (409-441)||(54878025-54878057)
chr4 (414-442)||(55563136-55563164)
[»] chr1 (21 HSPs)
chr1 (411-442)||(17483730-17483761)
chr1 (411-442)||(25283868-25283899)
chr1 (412-442)||(5765999-5766029)
chr1 (412-442)||(7763758-7763788)
chr1 (413-442)||(9413334-9413363)
chr1 (413-442)||(25509208-25509237)
chr1 (413-442)||(27037268-27037297)
chr1 (413-442)||(28885841-28885870)
chr1 (413-442)||(42276170-42276199)
chr1 (414-442)||(4280135-4280163)
chr1 (410-442)||(8104297-8104329)
chr1 (412-440)||(18237092-18237120)
chr1 (414-442)||(21631116-21631144)
chr1 (414-442)||(25227304-25227332)
chr1 (414-442)||(27037539-27037567)
chr1 (413-441)||(28886114-28886142)
chr1 (406-442)||(37951958-37951994)
chr1 (414-442)||(38613745-38613773)
chr1 (414-442)||(41317593-41317621)
chr1 (414-442)||(43456630-43456658)
chr1 (413-441)||(50937778-50937806)
[»] scaffold0237 (1 HSPs)
scaffold0237 (412-442)||(6618-6648)
[»] scaffold0674 (1 HSPs)
scaffold0674 (414-442)||(5151-5179)
[»] scaffold0549 (1 HSPs)
scaffold0549 (414-442)||(10191-10219)
[»] scaffold0250 (1 HSPs)
scaffold0250 (411-439)||(9438-9466)
[»] scaffold0240 (2 HSPs)
scaffold0240 (414-442)||(18497-18525)
scaffold0240 (414-442)||(18765-18793)
[»] scaffold0161 (1 HSPs)
scaffold0161 (414-442)||(3438-3466)
[»] scaffold0107 (1 HSPs)
scaffold0107 (414-442)||(48654-48682)


Alignment Details
Target: scaffold0036 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 21766 - 21382
Alignment:
Q  1 tgattgttccaagacctaagtttccaattactattttctcaaataaagatattaaatgtggtttatcgatggtgattgtaatgagcatgagtccaaaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21766 tgattgttccaagacctaagtttccaattactattttttgaaataaagctattaaatgtggtttatcgatggtgattgtaatgagcatgagtccaaaaaa 21667  T
Q  101 tagcgaccatcacaaccgtcttctatgtacttttttctttggcatcgttattgtaagttgtagcagtattgaataattgaaccaaaaggtttttgaagat 200  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21666 tagagaccatcacaaccgtcttctatgtacttttttctttggcatcgttattgtaagttgtaacagtattgaataattgaaccaaaaggtttttgaagat 21567  T
Q  201 aacttgatatagcacgtggacattatacatacaatattttggatcaattaatatcaatatagga---tattagttttatatgaattttattgatttgact 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||| |||||||||| |||||    
T  21566 aacttgatatagcacgtggacattatacatacaatattttggatcaattaatatcaatataggattgtattagttttatatgatttttattgatctgact 21467  T
Q  298 attctattttaggtgnnnnnnnaagggaaatactaacaagtattttaaagacacttataaaaagtctaacggaaatgttaacgagt 383  Q
    |||||||||||||||       |||||||||||| ||||||||| ||||||||||||||||||| |||| ||||||||||||||||    
T  21466 attctattttaggtg-ttttttaagggaaatactgacaagtattctaaagacacttataaaaagactaaaggaaatgttaacgagt 21382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 409 - 442
Target Start/End: Complemental strand, 24087377 - 24087344
Alignment:
Q  409 ttaaatactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||||||    
T  24087377 ttaaatactacctccgtccctaattataagaccc 24087344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 442
Target Start/End: Original strand, 42801517 - 42801549
Alignment:
Q  410 taaatactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||||||    
T  42801517 taaatactacctccgtccctaattataagaccc 42801549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 442
Target Start/End: Complemental strand, 4759390 - 4759360
Alignment:
Q  412 aatactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||||    
T  4759390 aatactacctccgtccctaattataagaccc 4759360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 442
Target Start/End: Complemental strand, 10015828 - 10015798
Alignment:
Q  412 aatactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||||    
T  10015828 aatactacctccgtccctaattataagaccc 10015798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 442
Target Start/End: Complemental strand, 19897875 - 19897845
Alignment:
Q  412 aatactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||||    
T  19897875 aatactacctccgtccctaattataagaccc 19897845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 442
Target Start/End: Complemental strand, 41392919 - 41392889
Alignment:
Q  412 aatactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||||    
T  41392919 aatactacctccgtccctaattataagaccc 41392889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 442
Target Start/End: Complemental strand, 48902747 - 48902717
Alignment:
Q  412 aatactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||||    
T  48902747 aatactacctccgtccctaattataagaccc 48902717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 442
Target Start/End: Complemental strand, 48904302 - 48904272
Alignment:
Q  412 aatactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||||    
T  48904302 aatactacctccgtccctaattataagaccc 48904272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Complemental strand, 12906451 - 12906422
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  12906451 atactacctccgtccctaattataagaccc 12906422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 17699070 - 17699041
Alignment:
Q  412 aatactacctccgtccctaattataagacc 441  Q
    ||||||||||||||||||||||||||||||    
T  17699070 aatactacctccgtccctaattataagacc 17699041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Complemental strand, 28875289 - 28875260
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  28875289 atactacctccgtccctaattataagaccc 28875260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Complemental strand, 46845530 - 46845501
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  46845530 atactacctccgtccctaattataagaccc 46845501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Complemental strand, 50433427 - 50433398
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  50433427 atactacctccgtccctaattataagaccc 50433398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 442
Target Start/End: Complemental strand, 1111689 - 1111657
Alignment:
Q  410 taaatactacctccgtccctaattataagaccc 442  Q
    ||||||||| |||||||||||||||||||||||    
T  1111689 taaatactatctccgtccctaattataagaccc 1111657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Original strand, 4759088 - 4759116
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  4759088 tactacctccgtccctaattataagaccc 4759116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Original strand, 8321925 - 8321953
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  8321925 tactacctccgtccctaattataagaccc 8321953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 442
Target Start/End: Original strand, 14428602 - 14428638
Alignment:
Q  406 attttaaatactacctccgtccctaattataagaccc 442  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  14428602 attttaattactccctccgtccctaattataagaccc 14428638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 442
Target Start/End: Complemental strand, 14428910 - 14428878
Alignment:
Q  410 taaatactacctccgtccctaattataagaccc 442  Q
    |||||||| ||||||||||||||||||||||||    
T  14428910 taaatactccctccgtccctaattataagaccc 14428878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 15996810 - 15996782
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  15996810 tactacctccgtccctaattataagaccc 15996782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 411 - 439
Target Start/End: Complemental strand, 28673334 - 28673306
Alignment:
Q  411 aaatactacctccgtccctaattataaga 439  Q
    |||||||||||||||||||||||||||||    
T  28673334 aaatactacctccgtccctaattataaga 28673306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 442
Target Start/End: Complemental strand, 29454831 - 29454795
Alignment:
Q  406 attttaaatactacctccgtccctaattataagaccc 442  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  29454831 attttatatactacctccgtccttaattataagaccc 29454795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 412 - 440
Target Start/End: Original strand, 42755339 - 42755367
Alignment:
Q  412 aatactacctccgtccctaattataagac 440  Q
    |||||||||||||||||||||||||||||    
T  42755339 aatactacctccgtccctaattataagac 42755367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 45513674 - 45513646
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  45513674 tactacctccgtccctaattataagaccc 45513646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 409 - 442
Target Start/End: Complemental strand, 12890250 - 12890217
Alignment:
Q  409 ttaaatactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||||||    
T  12890250 ttaaatactacctccgtccctaattataagaccc 12890217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Original strand, 2199977 - 2200006
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  2199977 atactacctccgtccctaattataagaccc 2200006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 442
Target Start/End: Original strand, 11201678 - 11201711
Alignment:
Q  409 ttaaatactacctccgtccctaattataagaccc 442  Q
    ||||||||| ||||||||||||||||||||||||    
T  11201678 ttaaatactccctccgtccctaattataagaccc 11201711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 442
Target Start/End: Complemental strand, 22182966 - 22182933
Alignment:
Q  409 ttaaatactacctccgtccctaattataagaccc 442  Q
    ||||||||| ||||||||||||||||||||||||    
T  22182966 ttaaatactccctccgtccctaattataagaccc 22182933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Original strand, 23083514 - 23083543
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  23083514 atactacctccgtccctaattataagaccc 23083543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Complemental strand, 26322331 - 26322302
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  26322331 atactacctccgtccctaattataagaccc 26322302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Original strand, 31751068 - 31751097
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  31751068 atactacctccgtccctaattataagaccc 31751097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Original strand, 41422511 - 41422540
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  41422511 atactacctccgtccctaattataagaccc 41422540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Complemental strand, 41494660 - 41494631
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  41494660 atactacctccgtccctaattataagaccc 41494631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Original strand, 2060316 - 2060344
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  2060316 tactacctccgtccctaattataagaccc 2060344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 2200277 - 2200249
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  2200277 tactacctccgtccctaattataagaccc 2200249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Original strand, 3095299 - 3095327
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  3095299 tactacctccgtccctaattataagaccc 3095327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 7116336 - 7116308
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  7116336 tactacctccgtccctaattataagaccc 7116308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 8912911 - 8912883
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  8912911 tactacctccgtccctaattataagaccc 8912883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 13215857 - 13215829
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  13215857 tactacctccgtccctaattataagaccc 13215829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 18374741 - 18374713
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  18374741 tactacctccgtccctaattataagaccc 18374713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Original strand, 24345417 - 24345445
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  24345417 tactacctccgtccctaattataagaccc 24345445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 24345715 - 24345687
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  24345715 tactacctccgtccctaattataagaccc 24345687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Original strand, 28566151 - 28566179
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  28566151 tactacctccgtccctaattataagaccc 28566179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 441
Target Start/End: Complemental strand, 29830792 - 29830764
Alignment:
Q  413 atactacctccgtccctaattataagacc 441  Q
    |||||||||||||||||||||||||||||    
T  29830792 atactacctccgtccctaattataagacc 29830764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 442
Target Start/End: Complemental strand, 1486 - 1455
Alignment:
Q  411 aaatactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||||    
T  1486 aaatactacctccgtccctaattataagaccc 1455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 442
Target Start/End: Original strand, 164211 - 164242
Alignment:
Q  411 aaatactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||||    
T  164211 aaatactacctccgtccctaattataagaccc 164242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 442
Target Start/End: Complemental strand, 2152284 - 2152249
Alignment:
Q  407 ttttaaatactacctccgtccctaattataagaccc 442  Q
    ||||| ||||||||||||||||||||||||||||||    
T  2152284 ttttatatactacctccgtccctaattataagaccc 2152249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 441
Target Start/End: Original strand, 36408411 - 36408442
Alignment:
Q  410 taaatactacctccgtccctaattataagacc 441  Q
    ||||||||||||||||||||||||||||||||    
T  36408411 taaatactacctccgtccctaattataagacc 36408442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 442
Target Start/End: Complemental strand, 23688204 - 23688174
Alignment:
Q  412 aatactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||||    
T  23688204 aatactacctccgtccctaattataagaccc 23688174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Original strand, 12802610 - 12802639
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  12802610 atactacctccgtccctaattataagaccc 12802639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Complemental strand, 18112013 - 18111984
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  18112013 atactacctccgtccctaattataagaccc 18111984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Original strand, 23487063 - 23487092
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  23487063 atactacctccgtccctaattataagaccc 23487092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 40784889 - 40784918
Alignment:
Q  412 aatactacctccgtccctaattataagacc 441  Q
    ||||||||||||||||||||||||||||||    
T  40784889 aatactacctccgtccctaattataagacc 40784918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Original strand, 44580615 - 44580644
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  44580615 atactacctccgtccctaattataagaccc 44580644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 442
Target Start/End: Original strand, 44888675 - 44888708
Alignment:
Q  409 ttaaatactacctccgtccctaattataagaccc 442  Q
    |||| |||||||||||||||||||||||||||||    
T  44888675 ttaactactacctccgtccctaattataagaccc 44888708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Original strand, 5162304 - 5162332
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  5162304 tactacctccgtccctaattataagaccc 5162332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 412 - 440
Target Start/End: Original strand, 5774046 - 5774074
Alignment:
Q  412 aatactacctccgtccctaattataagac 440  Q
    |||||||||||||||||||||||||||||    
T  5774046 aatactacctccgtccctaattataagac 5774074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 6050592 - 6050564
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  6050592 tactacctccgtccctaattataagaccc 6050564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 17069881 - 17069853
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  17069881 tactacctccgtccctaattataagaccc 17069853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Original strand, 17578392 - 17578420
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  17578392 tactacctccgtccctaattataagaccc 17578420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 18641417 - 18641389
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  18641417 tactacctccgtccctaattataagaccc 18641389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 412 - 440
Target Start/End: Original strand, 33980463 - 33980491
Alignment:
Q  412 aatactacctccgtccctaattataagac 440  Q
    |||||||||||||||||||||||||||||    
T  33980463 aatactacctccgtccctaattataagac 33980491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 412 - 440
Target Start/End: Original strand, 35179598 - 35179626
Alignment:
Q  412 aatactacctccgtccctaattataagac 440  Q
    |||||||||||||||||||||||||||||    
T  35179598 aatactacctccgtccctaattataagac 35179626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 45283829 - 45283801
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  45283829 tactacctccgtccctaattataagaccc 45283801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 442
Target Start/End: Complemental strand, 9140577 - 9140542
Alignment:
Q  407 ttttaaatactacctccgtccctaattataagaccc 442  Q
    |||||||||||| |||||||||||||||||||||||    
T  9140577 ttttaaatactatctccgtccctaattataagaccc 9140542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 442
Target Start/End: Complemental strand, 33381613 - 33381582
Alignment:
Q  411 aaatactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||||    
T  33381613 aaatactacctccgtccctaattataagaccc 33381582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 442
Target Start/End: Complemental strand, 42541899 - 42541868
Alignment:
Q  411 aaatactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||||    
T  42541899 aaatactacctccgtccctaattataagaccc 42541868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 442
Target Start/End: Complemental strand, 34012556 - 34012526
Alignment:
Q  412 aatactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||||    
T  34012556 aatactacctccgtccctaattataagaccc 34012526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Original strand, 1574718 - 1574747
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  1574718 atactacctccgtccctaattataagaccc 1574747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Complemental strand, 2290054 - 2290025
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  2290054 atactacctccgtccctaattataagaccc 2290025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Original strand, 27813495 - 27813524
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  27813495 atactacctccgtccctaattataagaccc 27813524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 441
Target Start/End: Complemental strand, 6799584 - 6799556
Alignment:
Q  413 atactacctccgtccctaattataagacc 441  Q
    |||||||||||||||||||||||||||||    
T  6799584 atactacctccgtccctaattataagacc 6799556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 412 - 440
Target Start/End: Original strand, 12930316 - 12930344
Alignment:
Q  412 aatactacctccgtccctaattataagac 440  Q
    |||||||||||||||||||||||||||||    
T  12930316 aatactacctccgtccctaattataagac 12930344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Original strand, 31581677 - 31581705
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  31581677 tactacctccgtccctaattataagaccc 31581705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 32118200 - 32118172
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  32118200 tactacctccgtccctaattataagaccc 32118172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 409 - 441
Target Start/End: Original strand, 32759551 - 32759583
Alignment:
Q  409 ttaaatactacctccgtccctaattataagacc 441  Q
    |||| ||||||||||||||||||||||||||||    
T  32759551 ttaattactacctccgtccctaattataagacc 32759583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 441
Target Start/End: Original strand, 35888311 - 35888339
Alignment:
Q  413 atactacctccgtccctaattataagacc 441  Q
    |||||||||||||||||||||||||||||    
T  35888311 atactacctccgtccctaattataagacc 35888339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 441
Target Start/End: Complemental strand, 46415043 - 46415015
Alignment:
Q  413 atactacctccgtccctaattataagacc 441  Q
    |||||||||||||||||||||||||||||    
T  46415043 atactacctccgtccctaattataagacc 46415015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 442
Target Start/End: Complemental strand, 16122554 - 16122523
Alignment:
Q  411 aaatactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||||    
T  16122554 aaatactacctccgtccctaattataagaccc 16122523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 442
Target Start/End: Complemental strand, 34915583 - 34915552
Alignment:
Q  411 aaatactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||||    
T  34915583 aaatactacctccgtccctaattataagaccc 34915552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 442
Target Start/End: Complemental strand, 13321365 - 13321335
Alignment:
Q  412 aatactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||||    
T  13321365 aatactacctccgtccctaattataagaccc 13321335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 442
Target Start/End: Original strand, 15498627 - 15498657
Alignment:
Q  412 aatactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||||    
T  15498627 aatactacctccgtccctaattataagaccc 15498657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 442
Target Start/End: Complemental strand, 25045682 - 25045652
Alignment:
Q  412 aatactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||||    
T  25045682 aatactacctccgtccctaattataagaccc 25045652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Complemental strand, 402659 - 402630
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  402659 atactacctccgtccctaattataagaccc 402630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Original strand, 13901640 - 13901669
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  13901640 atactacctccgtccctaattataagaccc 13901669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 442
Target Start/End: Complemental strand, 16273010 - 16272977
Alignment:
Q  409 ttaaatactacctccgtccctaattataagaccc 442  Q
    ||||||||| ||||||||||||||||||||||||    
T  16273010 ttaaatacttcctccgtccctaattataagaccc 16272977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Original strand, 23604459 - 23604488
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  23604459 atactacctccgtccctaattataagaccc 23604488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Original strand, 2090658 - 2090686
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  2090658 tactacctccgtccctaattataagaccc 2090686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 412 - 440
Target Start/End: Original strand, 7772174 - 7772202
Alignment:
Q  412 aatactacctccgtccctaattataagac 440  Q
    |||||||||||||||||||||||||||||    
T  7772174 aatactacctccgtccctaattataagac 7772202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 411 - 439
Target Start/End: Original strand, 11200591 - 11200619
Alignment:
Q  411 aaatactacctccgtccctaattataaga 439  Q
    |||||||||||||||||||||||||||||    
T  11200591 aaatactacctccgtccctaattataaga 11200619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Original strand, 13866593 - 13866621
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  13866593 tactacctccgtccctaattataagaccc 13866621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 409 - 437
Target Start/End: Complemental strand, 15967202 - 15967174
Alignment:
Q  409 ttaaatactacctccgtccctaattataa 437  Q
    |||||||||||||||||||||||||||||    
T  15967202 ttaaatactacctccgtccctaattataa 15967174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Original strand, 31091445 - 31091473
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  31091445 tactacctccgtccctaattataagaccc 31091473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 442
Target Start/End: Original strand, 8949809 - 8949840
Alignment:
Q  411 aaatactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||||    
T  8949809 aaatactacctccgtccctaattataagaccc 8949840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 442
Target Start/End: Complemental strand, 19571986 - 19571948
Alignment:
Q  404 tgattttaaatactacctccgtccctaattataagaccc 442  Q
    ||||||| | |||||||||||||||||||||||||||||    
T  19571986 tgatttttattactacctccgtccctaattataagaccc 19571948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Original strand, 3028012 - 3028041
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  3028012 atactacctccgtccctaattataagaccc 3028041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Original strand, 7940451 - 7940480
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  7940451 atactacctccgtccctaattataagaccc 7940480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 442
Target Start/End: Original strand, 9020689 - 9020722
Alignment:
Q  409 ttaaatactacctccgtccctaattataagaccc 442  Q
    ||||||||| ||||||||||||||||||||||||    
T  9020689 ttaaatactccctccgtccctaattataagaccc 9020722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Original strand, 14435829 - 14435858
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  14435829 atactacctccgtccctaattataagaccc 14435858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Complemental strand, 20142297 - 20142268
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  20142297 atactacctccgtccctaattataagaccc 20142268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Complemental strand, 23260176 - 23260147
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  23260176 atactacctccgtccctaattataagaccc 23260147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 4976327 - 4976299
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  4976327 tactacctccgtccctaattataagaccc 4976299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 439
Target Start/End: Original strand, 14571280 - 14571312
Alignment:
Q  407 ttttaaatactacctccgtccctaattataaga 439  Q
    ||||| |||||||||||||||||||||||||||    
T  14571280 ttttatatactacctccgtccctaattataaga 14571312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 442
Target Start/End: Original strand, 16127255 - 16127287
Alignment:
Q  410 taaatactacctccgtccctaattataagaccc 442  Q
    |||||||| ||||||||||||||||||||||||    
T  16127255 taaatactccctccgtccctaattataagaccc 16127287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 23286511 - 23286483
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  23286511 tactacctccgtccctaattataagaccc 23286483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 412 - 440
Target Start/End: Original strand, 24857554 - 24857582
Alignment:
Q  412 aatactacctccgtccctaattataagac 440  Q
    |||||||||||||||||||||||||||||    
T  24857554 aatactacctccgtccctaattataagac 24857582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 441
Target Start/End: Original strand, 32964132 - 32964160
Alignment:
Q  413 atactacctccgtccctaattataagacc 441  Q
    |||||||||||||||||||||||||||||    
T  32964132 atactacctccgtccctaattataagacc 32964160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 43060448 - 43060420
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  43060448 tactacctccgtccctaattataagaccc 43060420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 442
Target Start/End: Complemental strand, 49373737 - 49373702
Alignment:
Q  407 ttttaaatactacctccgtccctaattataagaccc 442  Q
    |||||| |||||||||||||||||||||||||||||    
T  49373737 ttttaattactacctccgtccctaattataagaccc 49373702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 442
Target Start/End: Original strand, 49793088 - 49793119
Alignment:
Q  411 aaatactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||||    
T  49793088 aaatactacctccgtccctaattataagaccc 49793119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 442
Target Start/End: Original strand, 56432515 - 56432546
Alignment:
Q  411 aaatactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||||    
T  56432515 aaatactacctccgtccctaattataagaccc 56432546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Original strand, 4415964 - 4415993
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  4415964 atactacctccgtccctaattataagaccc 4415993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Original strand, 18872716 - 18872745
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  18872716 atactacctccgtccctaattataagaccc 18872745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Complemental strand, 20455219 - 20455190
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  20455219 atactacctccgtccctaattataagaccc 20455190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 442
Target Start/End: Complemental strand, 20747472 - 20747439
Alignment:
Q  409 ttaaatactacctccgtccctaattataagaccc 442  Q
    ||||||||| ||||||||||||||||||||||||    
T  20747472 ttaaatactccctccgtccctaattataagaccc 20747439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Original strand, 21265219 - 21265248
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  21265219 atactacctccgtccctaattataagaccc 21265248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Complemental strand, 28501424 - 28501395
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  28501424 atactacctccgtccctaattataagaccc 28501395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Original strand, 29508597 - 29508626
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  29508597 atactacctccgtccctaattataagaccc 29508626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Original strand, 30523763 - 30523792
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  30523763 atactacctccgtccctaattataagaccc 30523792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Complemental strand, 32899256 - 32899227
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  32899256 atactacctccgtccctaattataagaccc 32899227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Original strand, 46949991 - 46950020
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  46949991 atactacctccgtccctaattataagaccc 46950020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 7698506 - 7698478
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  7698506 tactacctccgtccctaattataagaccc 7698478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 409 - 441
Target Start/End: Original strand, 18882346 - 18882378
Alignment:
Q  409 ttaaatactacctccgtccctaattataagacc 441  Q
    |||||||||| ||||||||||||||||||||||    
T  18882346 ttaaatactatctccgtccctaattataagacc 18882378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 25124283 - 25124255
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  25124283 tactacctccgtccctaattataagaccc 25124255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 29520201 - 29520173
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  29520201 tactacctccgtccctaattataagaccc 29520173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 412 - 440
Target Start/End: Complemental strand, 30050123 - 30050095
Alignment:
Q  412 aatactacctccgtccctaattataagac 440  Q
    |||||||||||||||||||||||||||||    
T  30050123 aatactacctccgtccctaattataagac 30050095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Original strand, 31937076 - 31937104
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  31937076 tactacctccgtccctaattataagaccc 31937104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 39671023 - 39670995
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  39671023 tactacctccgtccctaattataagaccc 39670995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 441
Target Start/End: Original strand, 39797433 - 39797461
Alignment:
Q  413 atactacctccgtccctaattataagacc 441  Q
    |||||||||||||||||||||||||||||    
T  39797433 atactacctccgtccctaattataagacc 39797461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 442
Target Start/End: Complemental strand, 42528634 - 42528602
Alignment:
Q  410 taaatactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||| |||||||||||    
T  42528634 taaatactacctccgtccctagttataagaccc 42528602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 53564393 - 53564365
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  53564393 tactacctccgtccctaattataagaccc 53564365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 409 - 441
Target Start/End: Complemental strand, 54878057 - 54878025
Alignment:
Q  409 ttaaatactacctccgtccctaattataagacc 441  Q
    |||| ||||||||||||||||||||||||||||    
T  54878057 ttaattactacctccgtccctaattataagacc 54878025  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 55563164 - 55563136
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  55563164 tactacctccgtccctaattataagaccc 55563136  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 442
Target Start/End: Original strand, 17483730 - 17483761
Alignment:
Q  411 aaatactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||||    
T  17483730 aaatactacctccgtccctaattataagaccc 17483761  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 442
Target Start/End: Original strand, 25283868 - 25283899
Alignment:
Q  411 aaatactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||||    
T  25283868 aaatactacctccgtccctaattataagaccc 25283899  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 442
Target Start/End: Complemental strand, 5766029 - 5765999
Alignment:
Q  412 aatactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||||    
T  5766029 aatactacctccgtccctaattataagaccc 5765999  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 442
Target Start/End: Complemental strand, 7763788 - 7763758
Alignment:
Q  412 aatactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||||    
T  7763788 aatactacctccgtccctaattataagaccc 7763758  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Complemental strand, 9413363 - 9413334
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  9413363 atactacctccgtccctaattataagaccc 9413334  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Original strand, 25509208 - 25509237
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  25509208 atactacctccgtccctaattataagaccc 25509237  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Original strand, 27037268 - 27037297
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  27037268 atactacctccgtccctaattataagaccc 27037297  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Original strand, 28885841 - 28885870
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  28885841 atactacctccgtccctaattataagaccc 28885870  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 442
Target Start/End: Complemental strand, 42276199 - 42276170
Alignment:
Q  413 atactacctccgtccctaattataagaccc 442  Q
    ||||||||||||||||||||||||||||||    
T  42276199 atactacctccgtccctaattataagaccc 42276170  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 4280163 - 4280135
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  4280163 tactacctccgtccctaattataagaccc 4280135  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 442
Target Start/End: Complemental strand, 8104329 - 8104297
Alignment:
Q  410 taaatactacctccgtccctaattataagaccc 442  Q
    |||||||| ||||||||||||||||||||||||    
T  8104329 taaatactccctccgtccctaattataagaccc 8104297  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 412 - 440
Target Start/End: Original strand, 18237092 - 18237120
Alignment:
Q  412 aatactacctccgtccctaattataagac 440  Q
    |||||||||||||||||||||||||||||    
T  18237092 aatactacctccgtccctaattataagac 18237120  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 21631144 - 21631116
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  21631144 tactacctccgtccctaattataagaccc 21631116  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Original strand, 25227304 - 25227332
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  25227304 tactacctccgtccctaattataagaccc 25227332  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 27037567 - 27037539
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  27037567 tactacctccgtccctaattataagaccc 27037539  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 441
Target Start/End: Complemental strand, 28886142 - 28886114
Alignment:
Q  413 atactacctccgtccctaattataagacc 441  Q
    |||||||||||||||||||||||||||||    
T  28886142 atactacctccgtccctaattataagacc 28886114  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 442
Target Start/End: Complemental strand, 37951994 - 37951958
Alignment:
Q  406 attttaaatactacctccgtccctaattataagaccc 442  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  37951994 atttttaatactccctccgtccctaattataagaccc 37951958  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 38613773 - 38613745
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  38613773 tactacctccgtccctaattataagaccc 38613745  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Original strand, 41317593 - 41317621
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  41317593 tactacctccgtccctaattataagaccc 41317621  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 43456658 - 43456630
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  43456658 tactacctccgtccctaattataagaccc 43456630  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 441
Target Start/End: Original strand, 50937778 - 50937806
Alignment:
Q  413 atactacctccgtccctaattataagacc 441  Q
    |||||||||||||||||||||||||||||    
T  50937778 atactacctccgtccctaattataagacc 50937806  T

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Target: scaffold0237 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 442
Target Start/End: Complemental strand, 6648 - 6618
Alignment:
Q  412 aatactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||||    
T  6648 aatactacctccgtccctaattataagaccc 6618  T

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Target: scaffold0674 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Original strand, 5151 - 5179
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  5151 tactacctccgtccctaattataagaccc 5179  T

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Target: scaffold0549 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 10219 - 10191
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  10219 tactacctccgtccctaattataagaccc 10191  T

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Target: scaffold0250 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 411 - 439
Target Start/End: Complemental strand, 9466 - 9438
Alignment:
Q  411 aaatactacctccgtccctaattataaga 439  Q
    |||||||||||||||||||||||||||||    
T  9466 aaatactacctccgtccctaattataaga 9438  T

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Target: scaffold0240 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Original strand, 18497 - 18525
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  18497 tactacctccgtccctaattataagaccc 18525  T

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Target: scaffold0240; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 18793 - 18765
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  18793 tactacctccgtccctaattataagaccc 18765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Original strand, 3438 - 3466
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  3438 tactacctccgtccctaattataagaccc 3466  T

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Target: scaffold0107 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Original strand, 48654 - 48682
Alignment:
Q  414 tactacctccgtccctaattataagaccc 442  Q
    |||||||||||||||||||||||||||||    
T  48654 tactacctccgtccctaattataagaccc 48682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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