View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14392_high_3 (Length: 684)

Name: NF14392_high_3
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14392_high_3
NF14392_high_3
[»] chr4 (1 HSPs)
chr4 (13-668)||(34669243-34669898)


Alignment Details
Target: chr4 (Bit Score: 611; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 13 - 668
Target Start/End: Complemental strand, 34669898 - 34669243
Alignment:
Q  13 aagaatatggtgcacaaatatcaattccaacaagagacaaaagcagtgaaaagaattccttacagtgtccaaaagaataatagttagaatgctgctgacc 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  34669898 aagaaaatggtgcacaaatatcaattccaacaagagacaaaagcagtgaaaagaattccttacagtttccaaaagaataatacttagaatgctgctgacc 34669799  T
Q  113 ttctccttgcattcccatatgttgattggtaataatattatgatccacagtcactttagtcccagaactacttgcaagactttgcaaataattgggttgt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34669798 ttctccttgcattcccatatgttgattggtaataatattatgatccacagtcactttagtcccagaactacttgcaagactttgcaaataattgggttgt 34669699  T
Q  213 gaaggttgccaaacattaggaccagcaacaacacagttcaataaatttgtttcctcgttttgcaaagcacctatacttccaaagctatttcctccataag 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34669698 gaaggttgccaaacattaggaccagcaacaacacagttcaataaatttgtttcctcgttttgcaaagcacctatacttccaaagctatttcctccataag 34669599  T
Q  313 gatattcaaaatagggattgtgtacaacattgttgttagccacaaaaggggcctcaaaagaagaccaatttccattgcttgaaacaggtacagcatcact 412  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34669598 gatattcaaaatagggattatgtacaacattgttgttagccacaaaaggggcctcaaaagaagaccaatttccattgcttgaaacaggtacagcatcact 34669499  T
Q  413 attgaaagagaatgaattttgggcaagacccataaatttggggtcagaagatggaacagtttggtcttgctgttgttggagtaggttttgtagtcgtgct 512  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34669498 attgtaagagaatgaattttgggcaagacccataaatttggggtcagaagatggaacagtttggtcttgctgttgttggagtaggttttgtagtcgtgct 34669399  T
Q  513 atttcattctgagcttcagtgaatgcaccaagtggaccattgattgggtcttgtttccacatctttgcttcccaatcaaaagactcgatggcnnnnnnnc 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |    
T  34669398 atttcattctgagcttcagtgaatgcaccaagtggaccattgattgggtcttgtttccacatctttgcttcccaatcaaaagactcgatggctttttttc 34669299  T
Q  613 ttccttgttcatcaaggtttctgagcattctttccaactttttgtaaccaaaaact 668  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34669298 ttccttgttcatcaaggtttctgagcattttttccaactttttgtaaccaaaaact 34669243  T

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