View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_high_30 (Length: 421)
Name: NF14392_high_30
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_high_30 |
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Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Complemental strand, 2903387 - 2902994
Alignment:
| Q |
18 |
aggaaaggcttgtttgccatatttgccatgctttaggccaggtccatgttgtccccctccgtctgggaaggctacaaatccttaaacttttgtagctttt |
117 |
Q |
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| T |
2903387 |
aggaaaggcttgtttgccatatttgccatgctttaggccaggtccatgttgtccccctccgtctgggaaggctacaaatccttaaacttttgtagctttt |
2903288 |
T |
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| Q |
118 |
ttgttacttttcggaataagaaatgtgagcttgtgaaagttctattatgtttttaataatacaataatatgaatagatggaagattataatttcatattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2903287 |
ttgttacttttcggaataagaaatgtgagcttgtgaaagttctattatgtttttaataatacaataatatgaatagatggaagattataatttcatattt |
2903188 |
T |
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| Q |
218 |
aaatcatgatgttctccacctaatagattagtcggttctcctcatgagcttaaattctaacattattaccaattttatttacttaatgtgcaactcgtcg |
317 |
Q |
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| T |
2903187 |
aaatcatgatgttctccacctaatagattagtcggttctcctaatgagcttaaattctaacattattaccaattttatttacttaatgtgcgactcgtcg |
2903088 |
T |
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| Q |
318 |
atgtcaacaatggctttcactctatcgatactcaagagcggacttgttcaatgcttggtgtggctattgcctcgccaagtcatcccaaaccttt |
411 |
Q |
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| T |
2903087 |
acgtcaacaatggctttcactctatcgatactcaagagcggacttgtttaaggcttggtgtggctattgcctcgccaactcatcccaaaccttt |
2902994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 2906115 - 2905924
Alignment:
| Q |
18 |
aggaaaggcttgtttgccatatttgccatgctttaggccaggtccatgttgtccccctccgtctgggaaggctacaaatccttaaacttttgtagctttt |
117 |
Q |
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|||||| | |||| |||||||| | |||||| ||||||||| |||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
2906115 |
aggaaatgtttgtgtgccatatataccatgccataggccaggcccatgttgcccccctccatctcggaaggctacaaatccttaaacttttgtagctttt |
2906016 |
T |
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| Q |
118 |
ttgttacttttcggaataagaaatgtgagcttgtgaaagttctattatgtttttaataatacaataatatgaatagatggaagattataatt |
209 |
Q |
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|||||| | || ||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
2906015 |
ttgttaatgtttggaataacatacttgagcttgtgaaagttctattatgtttttaataatacaataatatgaataaatgggagattataatt |
2905924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 178
Target Start/End: Complemental strand, 2901635 - 2901543
Alignment:
| Q |
85 |
aaggctacaaatccttaaacttttgtagcttttttgttactt-ttcggaataagaaatgtgagcttgtgaaagttctattatgtttttaataata |
178 |
Q |
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|||||||||||||||||| |||||||||| | | ||||||| ||| ||||| ||||||||||||| ||| | |||||||||| ||| |||||| |
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| T |
2901635 |
aaggctacaaatccttaacattttgtagctatatagttacttattc--aataataaatgtgagcttgagaatggtctattatgtatttcataata |
2901543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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