View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_high_33 (Length: 397)
Name: NF14392_high_33
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 10930478 - 10930117
Alignment:
| Q |
18 |
atgaaggacggcagattcagcagggaagctgtagatgctgtaggatggagaggaaagctttatatggtaaacgtaaaaggcgatgctgctaaagaaggag |
117 |
Q |
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| T |
10930478 |
atgaaggacggcagattcagcagggaagctgtagatgctgttggatggagaggaaagctttatatggtaaacgtaaaaggcgatgctgctaaagaaggag |
10930379 |
T |
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| Q |
118 |
ttgtgtatgatgttgaagaggatacatggaaggagatgccagaggggatgttgttagggtttcgaggaccggtggcggcgatggaggaggaagtgatgta |
217 |
Q |
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| T |
10930378 |
ttgtgtatgatgttgaagaggatacatggaaggagatgccagaggggatgttgttagggtttcgaggaccggtggcggcgatggaggaggaagtgatgta |
10930279 |
T |
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| Q |
218 |
tgtggtggatgaagctaaaggtattcttagtagatacaactcagaagatgatatttgggaaaagatttttgagtctcaaagactcaaaggagctgaacaa |
317 |
Q |
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| T |
10930278 |
tgtggtggatgaagctaaaggtattcttagtagatacaattcagaagatgatatttgggaaaagatttttgagtctcaaagactcaaaggagctgaacaa |
10930179 |
T |
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| Q |
318 |
atggttgcaaaacaaggtagaatttgtgttgtatccaccgccgggatatctgtggtggatgt |
379 |
Q |
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| T |
10930178 |
atggttgcaaaacaaggtagaatttgtgttgtttccaccgccgggatatctgtggtggatgt |
10930117 |
T |
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