View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_high_35 (Length: 373)
Name: NF14392_high_35
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_high_35 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 2 - 373
Target Start/End: Complemental strand, 30486446 - 30486077
Alignment:
| Q |
2 |
tatactcgtgataacttacttttattactcaaaaaacattgaattgaagggggtgatcgcacagtcttaattaggcatctacaagcatttcaattcaatg |
101 |
Q |
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| T |
30486446 |
tatactcgtgataacttacttttattactcaaaaaacattgaattgaagggggtgatcgcacaatcttaattaggcatctacaagcatttcaattcaatg |
30486347 |
T |
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| Q |
102 |
ttcgcttcacaatttgaactgaatgaccaaacgtaaataaaagctcaatgtaagagatggcataaacatttcttaagttaacactatcattgcacatgtg |
201 |
Q |
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| T |
30486346 |
ttcgcttcacaatttgaactgaatgaccaaacgtaaataaaagctcaatgtaagagatggcataaacatttcttaagttaacactatgattgcacatgtg |
30486247 |
T |
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| Q |
202 |
cggaacaacttaacttaggacgcctttctatacccatcttcgcataactttcttcagtattttgattaatataaaaatgtgaacgctattaatttttatc |
301 |
Q |
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| T |
30486246 |
cgaaacaacttaacttagaacgcctttctata-ccatcttcgcataactttcttcagtattttgattaatataaaaatgtgaacgctattaatttttatc |
30486148 |
T |
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| Q |
302 |
aaattaaaagaagggggaagaagnnnnnnnnngagtgcaaatgcaaaagcagcaaattgattccatgatact |
373 |
Q |
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| T |
30486147 |
aaattaaaagaagggggaagaa-aaaaaaaaagagtgcaaatgcaaaagcagcaaattgattccatgatact |
30486077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 77 - 312
Target Start/End: Complemental strand, 30507200 - 30506970
Alignment:
| Q |
77 |
catctacaagcatttcaattcaatgttcgcttcacaatttgaactgaatgaccaaacgtaaataaaagctcaatgtaagagatggcataaacatttctta |
176 |
Q |
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| T |
30507200 |
catctacaaacgtttcaattcattgtttggttcacaatttgaacttaatggacaaacatttataaaaatt-aatgtaagagatggtataaacatgtcttt |
30507102 |
T |
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| Q |
177 |
agttaacactatcattgcacatgtgcggaacaacttaac-ttaggacgcctttctatacccatcttcgcataactttcttcagtattttgattaatataa |
275 |
Q |
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| T |
30507101 |
agctaacac----attgcacatatgctaaacaacttaatattaggatgcaactctatacc-atccccacataactttattcagtattttgattaatagaa |
30507007 |
T |
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| Q |
276 |
aaatgtgaacgctattaatttttatcaaattaaaaga |
312 |
Q |
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| T |
30507006 |
aaatgtgaaagctattaattattattaaattaaaaga |
30506970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 148 - 312
Target Start/End: Complemental strand, 30522848 - 30522684
Alignment:
| Q |
148 |
aatgtaagagatggcataaacatttcttaagttaacactatcattgcacatgtgcggaacaacttaac-ttaggacgcctttctatacccatcttcgcat |
246 |
Q |
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| T |
30522848 |
aatgtaagaaatggtataaacatgtcttaagctaacactataattgcacataagctaaacaacttattattaggatgcaactctatacc-atacccacat |
30522750 |
T |
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| Q |
247 |
aactttcttcagtattttgattaatataaaaatgtgaacgctattaatttttatcaaattaaaaga |
312 |
Q |
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| T |
30522749 |
aactttattcagtattttgattaataaaaaaatgtgaaagctattaattattattaaattaaaaga |
30522684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 30506958 - 30506920
Alignment:
| Q |
335 |
agtgcaaatgcaaaagcagcaaattgattccatgatact |
373 |
Q |
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| T |
30506958 |
agtgcaaatgcaaaagcagcaaattgattccataatact |
30506920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 30522672 - 30522634
Alignment:
| Q |
335 |
agtgcaaatgcaaaagcagcaaattgattccatgatact |
373 |
Q |
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| T |
30522672 |
agtgcaaatgcaaaagcagcaaattgattccataatact |
30522634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 334 - 373
Target Start/End: Complemental strand, 30505899 - 30505860
Alignment:
| Q |
334 |
gagtgcaaatgcaaaagcagcaaattgattccatgatact |
373 |
Q |
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| T |
30505899 |
gagtgcaaatgcaaaagcagcaaattgattacataatact |
30505860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 30516689 - 30516649
Alignment:
| Q |
73 |
taggcatctacaagcatttcaattcaatgttcgcttcacaa |
113 |
Q |
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| T |
30516689 |
taggcatcaacaaacatttcaattcaatgtttgcttcacaa |
30516649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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