View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14392_high_38 (Length: 364)
Name: NF14392_high_38
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_high_38 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 5379910 - 5379564
Alignment:
| Q |
1 |
aaaccccattttctacctgtacaatagtagaaaaactgtcaattacatatgtttacattacaatttgcccctagaaaaa-caatagaatttaatttgtat |
99 |
Q |
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| T |
5379910 |
aaaccccattttctacctgtacaatagtagaaaaactgtcaattacatatgtttacattacaatttgccactagaaaaaacaatagagtttaatttgtat |
5379811 |
T |
|
| Q |
100 |
acactgacaatgtaaaatagttttacacaatcaatataacaagtaaaaagaagcacaaaaccaaaagaaggaatcacctgaactttgtgaaggaacaacc |
199 |
Q |
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| T |
5379810 |
acactgacaatgtaaaatagttttacacaatcaatataacaagtaaaaagaagcacaaaaccaaaagaaggaatcacctgaactttgtgaaggaacaacc |
5379711 |
T |
|
| Q |
200 |
actagaagtgtaatgcaatcaccaggttgaacaacatgagtcagtgaccaaacaagagctgtcttcggaatttcctttgtcgatgccttaacagcaacaa |
299 |
Q |
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| T |
5379710 |
accagaagtgtaatgcaatcaccaggttgaacaacatgagtcagtgaccaaacaagagctgtcttcggaatttcctttgtcgatgccttaacagcaacaa |
5379611 |
T |
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| Q |
300 |
taaccttctcagcaccatcacagcctttctcttgcttccccctcttc |
346 |
Q |
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| T |
5379610 |
taaccttctcagcaccatcacagcctttctcttgcttccccctcttc |
5379564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 175 - 339
Target Start/End: Original strand, 43074189 - 43074350
Alignment:
| Q |
175 |
acctgaactttgtgaaggaacaaccactagaagtgtaatgcaatcaccaggttgaacaacatgagtcagtgaccaaacaagagctgtcttcggaatttcc |
274 |
Q |
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| T |
43074189 |
acctgaactttgtgaaggtacaaccactagcaatgtaatgcaatcaccaggttgaacaacatgagttagagaccaaacaagagcactctttggaatttcc |
43074288 |
T |
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| Q |
275 |
tttgtcgatgccttaacagcaacaataaccttctcagcaccatcacagcctttctcttgcttccc |
339 |
Q |
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| |||| ||||| ||||||||||||||||| ||||||||||| | ||||| || |||||||| |
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| T |
43074289 |
t---tcgacgccttgacagcaacaataacctttccagcaccatcagaacctttttcatgcttccc |
43074350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 316
Target Start/End: Original strand, 46538228 - 46538308
Alignment:
| Q |
232 |
aacatgagtcagtgaccaaacaagagctgtcttcggaatttcctttgtcgatgccttaacagcaacaataaccttctcagcacca |
316 |
Q |
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| T |
46538228 |
aacataagtcaatgaccaaacaagagcagcctttggaatttccttt---gatgccttaacaacaacaat-accttctcagcacca |
46538308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 124
Target Start/End: Original strand, 7352094 - 7352132
Alignment:
| Q |
86 |
aatttaatttgtatacactgacaatgtaaaatagtttta |
124 |
Q |
| |
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| T |
7352094 |
aatttaatttgtatacagtgacagtgtaaaatagtttta |
7352132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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