View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14392_high_4 (Length: 679)

Name: NF14392_high_4
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14392_high_4
NF14392_high_4
[»] chr5 (13 HSPs)
chr5 (17-425)||(19716688-19717107)
chr5 (17-452)||(19714772-19715224)
chr5 (534-658)||(18569930-18570055)
chr5 (534-649)||(19714574-19714690)
chr5 (534-658)||(24695533-24695658)
chr5 (534-649)||(19707294-19707410)
chr5 (536-619)||(39537979-39538062)
chr5 (535-650)||(27347553-27347668)
chr5 (538-619)||(22547123-22547204)
chr5 (534-617)||(17285841-17285924)
chr5 (536-619)||(31886548-31886631)
chr5 (545-600)||(33477424-33477479)
chr5 (534-600)||(17299011-17299077)
[»] chr4 (24 HSPs)
chr4 (534-658)||(4426671-4426795)
chr4 (534-658)||(8845218-8845343)
chr4 (534-658)||(8858182-8858307)
chr4 (534-658)||(26963655-26963780)
chr4 (534-658)||(868612-868737)
chr4 (534-658)||(5713963-5714088)
chr4 (534-658)||(18262227-18262352)
chr4 (534-658)||(19926827-19926952)
chr4 (534-658)||(26970478-26970603)
chr4 (534-638)||(10621421-10621525)
chr4 (534-638)||(10628500-10628604)
chr4 (539-658)||(18269093-18269213)
chr4 (534-638)||(55612698-55612802)
chr4 (534-658)||(5707335-5707460)
chr4 (534-634)||(12357151-12357251)
chr4 (534-650)||(28393209-28393326)
chr4 (535-600)||(35223586-35223651)
chr4 (534-637)||(20311306-20311410)
chr4 (535-600)||(5668252-5668317)
chr4 (538-657)||(5616232-5616352)
chr4 (534-658)||(10677620-10677744)
chr4 (534-658)||(10891260-10891384)
chr4 (545-601)||(21454263-21454319)
chr4 (424-452)||(28393408-28393436)
[»] chr6 (14 HSPs)
chr6 (534-658)||(16566387-16566512)
chr6 (534-658)||(17684536-17684661)
chr6 (534-658)||(17691507-17691632)
chr6 (534-658)||(29308905-29309030)
chr6 (534-658)||(29315865-29315990)
chr6 (534-650)||(189052-189169)
chr6 (534-650)||(25537234-25537351)
chr6 (534-638)||(27381340-27381444)
chr6 (534-638)||(27471723-27471827)
chr6 (534-638)||(11651738-11651842)
chr6 (538-658)||(13359336-13359457)
chr6 (558-658)||(20553654-20553755)
chr6 (534-580)||(31258066-31258112)
chr6 (542-575)||(27925772-27925805)
[»] chr3 (27 HSPs)
chr3 (534-658)||(18522678-18522803)
chr3 (534-638)||(18519993-18520097)
chr3 (534-658)||(6110079-6110204)
chr3 (534-658)||(10572659-10572784)
chr3 (534-658)||(13211317-13211442)
chr3 (534-658)||(15600951-15601076)
chr3 (534-658)||(15607496-15607621)
chr3 (534-658)||(17781185-17781310)
chr3 (534-638)||(13248622-13248726)
chr3 (534-638)||(16482571-16482675)
chr3 (534-658)||(10579422-10579547)
chr3 (534-658)||(15357653-15357778)
chr3 (534-658)||(17200251-17200376)
chr3 (534-658)||(18640813-18640938)
chr3 (534-658)||(19089812-19089937)
chr3 (534-638)||(8490503-8490607)
chr3 (534-638)||(13516826-13516930)
chr3 (534-661)||(1647585-1647717)
chr3 (538-658)||(15342286-15342407)
chr3 (534-650)||(32056975-32057092)
chr3 (539-650)||(16200145-16200257)
chr3 (539-650)||(16200451-16200563)
chr3 (534-649)||(29924986-29925102)
chr3 (534-649)||(29974139-29974255)
chr3 (534-580)||(18534771-18534817)
chr3 (534-650)||(24253463-24253581)
chr3 (534-566)||(18510937-18510969)
[»] chr8 (8 HSPs)
chr8 (534-638)||(6094138-6094242)
chr8 (535-650)||(24636870-24636986)
chr8 (534-658)||(21940680-21940805)
chr8 (534-650)||(24642664-24642781)
chr8 (534-658)||(22171504-22171627)
chr8 (534-658)||(28554898-28555023)
chr8 (540-598)||(2375027-2375085)
chr8 (534-590)||(38232512-38232567)
[»] scaffold0234 (2 HSPs)
scaffold0234 (534-658)||(2388-2513)
scaffold0234 (534-658)||(11279-11404)
[»] scaffold0063 (1 HSPs)
scaffold0063 (534-650)||(5544-5661)
[»] chr2 (5 HSPs)
chr2 (534-658)||(21330315-21330440)
chr2 (538-649)||(18796525-18796637)
chr2 (535-650)||(18619821-18619936)
chr2 (534-600)||(19692662-19692728)
chr2 (584-658)||(20977957-20978032)
[»] chr1 (14 HSPs)
chr1 (534-658)||(18252045-18252170)
chr1 (534-658)||(21171300-21171425)
chr1 (538-649)||(3855995-3856107)
chr1 (534-638)||(27131497-27131601)
chr1 (534-650)||(16359110-16359227)
chr1 (534-658)||(18532581-18532706)
chr1 (534-650)||(27310652-27310769)
chr1 (539-637)||(22657310-22657408)
chr1 (534-655)||(36816703-36816825)
chr1 (553-658)||(12006606-12006712)
chr1 (553-658)||(12014351-12014457)
chr1 (539-599)||(27277682-27277742)
chr1 (534-566)||(9918071-9918103)
chr1 (534-594)||(30720625-30720685)
[»] scaffold0186 (1 HSPs)
scaffold0186 (534-658)||(26057-26182)
[»] chr7 (13 HSPs)
chr7 (534-658)||(11536129-11536254)
chr7 (534-658)||(11543047-11543172)
chr7 (534-658)||(15152458-15152583)
chr7 (534-658)||(29327799-29327924)
chr7 (534-658)||(12750841-12750966)
chr7 (534-658)||(18257909-18258034)
chr7 (534-650)||(18561022-18561139)
chr7 (534-650)||(15148157-15148274)
chr7 (534-650)||(12738551-12738668)
chr7 (535-619)||(13392167-13392251)
chr7 (538-600)||(39111832-39111893)
chr7 (541-630)||(2364917-2365006)
chr7 (569-634)||(10234179-10234244)
[»] scaffold0433 (1 HSPs)
scaffold0433 (534-658)||(7122-7247)
[»] scaffold0390 (2 HSPs)
scaffold0390 (534-658)||(7001-7126)
scaffold0390 (534-638)||(14038-14142)
[»] scaffold0220 (1 HSPs)
scaffold0220 (534-658)||(18303-18428)
[»] scaffold0657 (1 HSPs)
scaffold0657 (534-634)||(1008-1108)
[»] scaffold0008 (1 HSPs)
scaffold0008 (534-638)||(230429-230532)
[»] scaffold0176 (1 HSPs)
scaffold0176 (534-580)||(8449-8495)
[»] scaffold0565 (1 HSPs)
scaffold0565 (538-569)||(10127-10158)


Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 425
Target Start/End: Complemental strand, 19717107 - 19716688
Alignment:
Q  17 aatatatatttatttgtgtctgttccactcatttctctccaaagtacca------------atatatatatactacaagagtactagtaattcatacgtg 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||| ||||||||||||||||||||    
T  19717107 aatatatatttatttgtgtctgttccactcatttctctccaaagtaccagtatatatatatatatatatatactacaagggtactagtaattcatacgtg 19717008  T
Q  105 tggtgtggggtctcaacttaatttttt-ctctcattcgtgtggatgtggaagagtgtgtactctaattcattcaaacatcataccattattgtatattga 203  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19717007 tggtgtggggtctcaacttaatttttttctctcattcgtgtggatgtggaagagtgtgtactctaattcattcatacatcataccattattgtatattga 19716908  T
Q  204 tgggtatgttcaactgttgtatgtactttaaccactcaaaaatatgaaaaaaccaatttgatttcaatttgacttcatcctattaataacccattcattc 303  Q
    ||||||||||||||| |||||||| ||||||| | |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19716907 tgggtatgttcaactattgtatgtgctttaac-attcaaaaatgtgaaaaa-ccaatttgatttcaatttgacttcatcctattaataacccattcattc 19716810  T
Q  304 attaattcattttgttttcaaatatcaaatacgtacatagctcattcccaccttctctctatcataccaaaacaacctccatcctatctgaaagattaag 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  19716809 attaattcattttgttttcaaatatcaaatacgtacatagctcattcccaccttctctctatcagaccaaaacaacctccatcctatctgaaagattatg 19716710  T
Q  404 tgtgtaattcttcctcttctac 425  Q
    ||||||||||||||||||||||    
T  19716709 tgtgtaattcttcctcttctac 19716688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 452
Target Start/End: Complemental strand, 19715224 - 19714772
Alignment:
Q  17 aatatatatttatttgtgtctgttccactcatttctctccaaagtaccaatatatatata------------------ctacaagagtactagtaattca 98  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||                  ||||||||||||||||||||||    
T  19715224 aatatatatttatttgtgtttgttccactcatttctctcaaaagtaccaatatatatatatatagacacacacacacactacaagagtactagtaattca 19715125  T
Q  99 tacgtgtggtgtggggtctcaacttaattttttctctcattcgtgtggatgtggaagagtgtgtactctaattcattcaaacatcataccattattgtat 198  Q
    || |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||    
T  19715124 tatgtgtggtgtgaggtctcaacttaattttttctctcattcatgtggatgtggaagagtgtgtactctaatttatttatacatcataccattattgtat 19715025  T
Q  199 attgatgggtatgttcaactgttgtatgtactttaaccactcaaaaatatgaaaaaaccaatttgatttcaatttgacttcatcctattaataacccatt 298  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||| | || ||||| ||||    
T  19715024 attgatgggtatgttcaactgttgtatgtgctttaaccactcaaaaatatgaaaaa-ccaatttgattttaatttgacttcatcttgttgataactcatt 19714926  T
Q  299 cattcattaattcattttgttttcaaatatcaaatacgtacatagctcattcccaccttctctctatcataccaaaacaacctccatcctatctgaaaga 398  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  19714925 cattcattaattcattttgttttcaattatcaaatacgtacatagctcattcgcaccttctctctatcagaccaaaacaacctccatcctatctgaaaga 19714826  T
Q  399 ttaagtgtgtaattcttcctcttctactgttggagtaagccctaatagccaatc 452  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19714825 ttatgtgtgtaattcttcctcttctactgttggagtaagccctaatagccaatc 19714772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 534 - 658
Target Start/End: Complemental strand, 18570055 - 18569930
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||| |||||||||||||    
T  18570055 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaattgaacattaagtataacttaattgtgagaccccgttaaacata 18569956  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || || |||||||| |||||||    
T  18569955 aggaaactactcttaaagtatccgta 18569930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 534 - 649
Target Start/End: Complemental strand, 19714690 - 19714574
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  19714690 attgattttgttttatttcaaagtaataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccgttaaacata 19714591  T
Q  634 aggaat-tattcttaaa 649  Q
    |||||| ||||||||||    
T  19714590 aggaatctattcttaaa 19714574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 534 - 658
Target Start/End: Complemental strand, 24695658 - 24695533
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  24695658 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacata 24695559  T
Q  634 a-ggaattattcttaaagcatccgta 658  Q
    | | || |||||| |||| |||||||    
T  24695558 atgaaactattctaaaagtatccgta 24695533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 534 - 649
Target Start/End: Complemental strand, 19707410 - 19707294
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  19707410 attgattttgttttatttcaaagtaataaagtccctagaatagttagtcagtttaatggaacattaagtataacttaattgtgagaccccgttaaacata 19707311  T
Q  634 aggaat-tattcttaaa 649  Q
    |||||| ||||||||||    
T  19707310 aggaatctattcttaaa 19707294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 536 - 619
Target Start/End: Original strand, 39537979 - 39538062
Alignment:
Q  536 tgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgaga 619  Q
    ||||||||||||||||||||||  | |||||| |||||||||| |  |||||||||||||||||| ||||||||||||||||||    
T  39537979 tgattttgttttgtttcaaaatggttaagtccttagaatagttggttcgtttaatggaacattaagtataacttaattgtgaga 39538062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 535 - 650
Target Start/End: Complemental strand, 27347668 - 27347553
Alignment:
Q  535 ttgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacataa 634  Q
    |||||||||||||| |||||||||||||||||| ||||||| |||  | |||||||||| |||||| | | ||||||| |||||| ||| ||||||  ||    
T  27347668 ttgattttgttttgattcaaaataataaagtccttagaataattaatctgtttaatggagcattaagtgtgacttaatcgtgaga-cccattaaacgaaa 27347570  T
Q  635 gga-attattcttaaag 650  Q
    ||| |||||||||||||    
T  27347569 ggacattattcttaaag 27347553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 538 - 619
Target Start/End: Complemental strand, 22547204 - 22547123
Alignment:
Q  538 attttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgaga 619  Q
    |||||||||| ||| |||||||||||  | ||| ||||||||| | ||||||||||||||||| ||||||||||| ||||||    
T  22547204 attttgttttattttaaaataataaaaccgctataatagttagtcggtttaatggaacattaagtataacttaatcgtgaga 22547123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 534 - 617
Target Start/End: Complemental strand, 17285924 - 17285841
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtga 617  Q
    |||||||||||| ||||||||||||||||  |||  ||||||||||| | ||||||||||||||||| | | ||||||| ||||    
T  17285924 attgattttgttatgtttcaaaataataatctccagagaatagttagtctgtttaatggaacattaagtgtgacttaatcgtga 17285841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 536 - 619
Target Start/End: Original strand, 31886548 - 31886631
Alignment:
Q  536 tgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgaga 619  Q
    |||||||||||||||||||| ||||||||||| ||||||| ||||  | |||||| |||||| || ||  ||||||| ||||||    
T  31886548 tgattttgttttgtttcaaattaataaagtccttagaataattagttcatttaattgaacatcaagtacgacttaatcgtgaga 31886631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 600
Target Start/End: Complemental strand, 33477479 - 33477424
Alignment:
Q  545 tttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaa 600  Q
    ||||||||||||||||||||||| || ||||||||| | | |||||||| ||||||    
T  33477479 tttgtttcaaaataataaagtccttacaatagttaggctgattaatggatcattaa 33477424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 600
Target Start/End: Complemental strand, 17299077 - 17299011
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaa 600  Q
    |||||||||||| |||||  |||||||||  |||  ||||||||||| ||| |||||||||||||||    
T  17299077 attgattttgttatgtttataaataataatatccagagaatagttagtccgattaatggaacattaa 17299011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 1e-49; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 534 - 658
Target Start/End: Complemental strand, 4426795 - 4426671
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  4426795 attgattttgttttgtttcaaaataataaagtccttagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccgttaaacata 4426696  T
Q  634 aggaattattcttaaagcatccgta 658  Q
    ||||| ||||||||||| |||||||    
T  4426695 aggaactattcttaaagtatccgta 4426671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 534 - 658
Target Start/End: Original strand, 8845218 - 8845343
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  8845218 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagatcccgttaaacata 8845317  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || ||||||||||| |||||||    
T  8845318 aggaaactattcttaaagtatccgta 8845343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 534 - 658
Target Start/End: Original strand, 8858182 - 8858307
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  8858182 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagatcccgttaaacata 8858281  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || ||||||||||| |||||||    
T  8858282 aggaaactattcttaaagtatccgta 8858307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 534 - 658
Target Start/End: Original strand, 26963655 - 26963780
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  26963655 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaaatataacttaattgtgagaccccattaaacata 26963754  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || |||||| |||| |||||||    
T  26963755 aggaaactattctcaaagtatccgta 26963780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 534 - 658
Target Start/End: Original strand, 868612 - 868737
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||| |||||||||||||    
T  868612 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccgttaaacata 868711  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || |||||| |||| |||||||    
T  868712 aggaaactattctcaaagtatccgta 868737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 534 - 658
Target Start/End: Original strand, 5713963 - 5714088
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  5713963 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccatttaatggaacattaagtataacttaattgtgagaccccattaaacata 5714062  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || |||||| |||| |||||||    
T  5714063 aggaaactattctcaaagtatccgta 5714088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 534 - 658
Target Start/End: Original strand, 18262227 - 18262352
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  18262227 attgattttgtttcgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccgttaaacata 18262326  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || |||||| |||| |||||||    
T  18262327 aggaaactattctcaaagtatccgta 18262352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 534 - 658
Target Start/End: Complemental strand, 19926952 - 19926827
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  19926952 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacata 19926853  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || |||||| |||| |||||||    
T  19926852 aggaaactattctcaaagtatccgta 19926827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 534 - 658
Target Start/End: Original strand, 26970478 - 26970603
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  26970478 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacata 26970577  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || |||||| |||| |||||||    
T  26970578 aggaaactattctcaaagtatccgta 26970603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 534 - 638
Target Start/End: Complemental strand, 10621525 - 10621421
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  10621525 attgattttgttttgtttcaaaataataaagtccctggaatagttagtccgtttaatggaacattaagtataacttaattgtgagagcccattaaacata 10621426  T
Q  634 aggaa 638  Q
    |||||    
T  10621425 aggaa 10621421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 534 - 638
Target Start/End: Complemental strand, 10628604 - 10628500
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  10628604 attgattttgttttgtttcaaaataataaagtccctggaatagttagtccgtttaatggaacattaagtataacttaattgtgagagcccattaaacata 10628505  T
Q  634 aggaa 638  Q
    |||||    
T  10628504 aggaa 10628500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 539 - 658
Target Start/End: Original strand, 18269093 - 18269213
Alignment:
Q  539 ttttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacataagg-a 637  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |    
T  18269093 ttttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccgttaaacataaggaa 18269192  T
Q  638 attattcttaaagcatccgta 658  Q
    | |||||| |||| |||||||    
T  18269193 actattctcaaagtatccgta 18269213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 534 - 638
Target Start/End: Original strand, 55612698 - 55612802
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  55612698 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacata 55612797  T
Q  634 aggaa 638  Q
    |||||    
T  55612798 aggaa 55612802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 534 - 658
Target Start/End: Original strand, 5707335 - 5707460
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  5707335 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccattaaacata 5707434  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || |||||| |||| |||||||    
T  5707435 aggaaactattctcaaagtatccgta 5707460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 534 - 634
Target Start/End: Original strand, 12357151 - 12357251
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  12357151 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacata 12357250  T
Q  634 a 634  Q
    |    
T  12357251 a 12357251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 534 - 650
Target Start/End: Complemental strand, 28393326 - 28393209
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  28393326 attgattttgatttgtttcaaaataataaagtccctaaaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacata 28393227  T
Q  634 agg-aattattcttaaag 650  Q
    ||| || |||||||||||    
T  28393226 aggaaactattcttaaag 28393209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 535 - 600
Target Start/End: Original strand, 35223586 - 35223651
Alignment:
Q  535 ttgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaa 600  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||| | |||||||||| ||||||    
T  35223586 ttgattttgttttgttttaaaataataaagtccctagaataattagtctgtttaatggagcattaa 35223651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 534 - 637
Target Start/End: Original strand, 20311306 - 20311410
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaa-atataacttaattgtgagagcccgttaaacat 632  Q
    |||||||||||||||||| ||||||||||||| | || ||||||||    ||| |||||| ||||||  |||||||||||||||||| ||| ||||||||    
T  20311306 attgattttgttttgttttaaaataataaagtacttataatagttaatatgttcaatggagcattaaggtataacttaattgtgagaccccattaaacat 20311405  T
Q  633 aagga 637  Q
    |||||    
T  20311406 aagga 20311410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 535 - 600
Target Start/End: Complemental strand, 5668317 - 5668252
Alignment:
Q  535 ttgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaa 600  Q
    |||||||||||||||||||||||||||||||| |||||||| |||| |  ||||||||| ||||||    
T  5668317 ttgattttgttttgtttcaaaataataaagtctctagaataattagtctatttaatggagcattaa 5668252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 538 - 657
Target Start/End: Original strand, 5616232 - 5616352
Alignment:
Q  538 attttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacataagga 637  Q
    |||||||||||||||||||||||||||| |||| |||| |||| |  |||  ||||||||||| | | ||| |||  ||||| ||||||||||   ||||    
T  5616232 attttgttttgtttcaaaataataaagttcctaaaataattagtctatttcttggaacattaagtctgactaaatcatgagatcccgttaaactagagga 5616331  T
Q  638 -attattcttaaagcatccgt 657  Q
     ||||||||||||| ||||||    
T  5616332 cattattcttaaagtatccgt 5616352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 534 - 658
Target Start/End: Complemental strand, 10677744 - 10677620
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||| ||||||||||| | ||||||| ||||| |||| |||| | || ||||||| |||||| ||| ||||||| | |||| ||| ||||||  |    
T  10677744 attgattttcttttgtttcaataaaataaagcccctaaaataattagtctgtataatggagcattaagtatgacttaatcgcgaga-cccattaaacgaa 10677646  T
Q  634 agga-attattcttaaagcatccgta 658  Q
    | || ||||||||||||| |||||||    
T  10677645 atgatattattcttaaagtatccgta 10677620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 534 - 658
Target Start/End: Complemental strand, 10891384 - 10891260
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||| ||||||||||| | ||||||| ||||| |||| |||| | || ||||||| |||||| ||| ||||||| | |||| ||| ||||||  |    
T  10891384 attgattttcttttgtttcaataaaataaagcccctaaaataattagtctgtataatggagcattaagtatgacttaatcgcgaga-cccattaaacgaa 10891286  T
Q  634 agga-attattcttaaagcatccgta 658  Q
    | || ||||||||||||| |||||||    
T  10891285 atgatattattcttaaagtatccgta 10891260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 545 - 601
Target Start/End: Complemental strand, 21454319 - 21454263
Alignment:
Q  545 tttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaa 601  Q
    ||||||||||| ||||||||| | ||||||||||||   | ||||||||||||||||    
T  21454319 tttgtttcaaagtaataaagttcttagaatagttagtttgattaatggaacattaaa 21454263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 424 - 452
Target Start/End: Complemental strand, 28393436 - 28393408
Alignment:
Q  424 actgttggagtaagccctaatagccaatc 452  Q
    |||||||||||||||||||||||||||||    
T  28393436 actgttggagtaagccctaatagccaatc 28393408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 6e-48; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 534 - 658
Target Start/End: Complemental strand, 16566512 - 16566387
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  16566512 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccgttaaacata 16566413  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || ||||||||||| |||||||    
T  16566412 aggaaactattcttaaagtatccgta 16566387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 534 - 658
Target Start/End: Complemental strand, 17684661 - 17684536
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  17684661 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccgttaaacata 17684562  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || |||||| |||| |||||||    
T  17684561 aggaaactattctcaaagtatccgta 17684536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 534 - 658
Target Start/End: Complemental strand, 17691632 - 17691507
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  17691632 attgattttgttttctttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacata 17691533  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || ||||||||||| |||||||    
T  17691532 aggaaactattcttaaagtatccgta 17691507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 534 - 658
Target Start/End: Original strand, 29308905 - 29309030
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||| |||||||||    
T  29308905 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagagcccattaaacata 29309004  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || |||||| |||| |||||||    
T  29309005 aggaaactattctcaaagtatccgta 29309030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 534 - 658
Target Start/End: Original strand, 29315865 - 29315990
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||| |||||||||    
T  29315865 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagagcccattaaacata 29315964  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || |||||| |||| |||||||    
T  29315965 aggaaactattctcaaagtatccgta 29315990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 534 - 650
Target Start/End: Complemental strand, 189169 - 189052
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  189169 attgattttgttttgtttcaaaataataaagtccttagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacata 189070  T
Q  634 agg-aattattcttaaag 650  Q
    ||| || |||||||||||    
T  189069 aggaaactattcttaaag 189052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 534 - 650
Target Start/End: Complemental strand, 25537351 - 25537234
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||| ||||||||| |||||||||||||    
T  25537351 attgattttgttttgtttcaaaataataaagtccctagaataattagtccgtttaatggaacattaagtataactttattgtgagaccccgttaaacata 25537252  T
Q  634 agg-aattattcttaaag 650  Q
    ||| || |||||||||||    
T  25537251 aggaaactattcttaaag 25537234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 534 - 638
Target Start/End: Complemental strand, 27381444 - 27381340
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  27381444 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacata 27381345  T
Q  634 aggaa 638  Q
     ||||    
T  27381344 tggaa 27381340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 534 - 638
Target Start/End: Complemental strand, 27471827 - 27471723
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  27471827 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacata 27471728  T
Q  634 aggaa 638  Q
     ||||    
T  27471727 tggaa 27471723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 534 - 638
Target Start/End: Original strand, 11651738 - 11651842
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||| ||| ||||| |||    
T  11651738 attgattttgatttgtttcaaaataataaagtccctaaaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaaaata 11651837  T
Q  634 aggaa 638  Q
    |||||    
T  11651838 aggaa 11651842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 538 - 658
Target Start/End: Complemental strand, 13359457 - 13359336
Alignment:
Q  538 attttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacataagga 637  Q
    |||||||||||||||||||||||||||||||||||||||||||  || |||||||| |||||| ||||||||||| |||| |  || ||||||||||  |    
T  13359457 attttgttttgtttcaaaataataaagtccctagaatagttagttcgcttaatggagcattaagtataacttaatcgtgaaactccattaaacataaaaa 13359358  T
Q  638 -attattcttaaagcatccgta 658  Q
     |||||| |||||| |||||||    
T  13359357 cattatttttaaagtatccgta 13359336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 558 - 658
Target Start/End: Complemental strand, 20553755 - 20553654
Alignment:
Q  558 aataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacataagga-attattcttaaagcatccg 656  Q
    ||||||||| |||| |||| ||| |||||||||| || ||||| ||  ||||||| |||||| ||| ||||| ||||| | |||||||||||||||||||    
T  20553755 aataaagtctctaggatagctagtccgtttaatgaaatattaagtacgacttaatcgtgagatcccattaaatataagaatattattcttaaagcatccg 20553656  T
Q  657 ta 658  Q
    ||    
T  20553655 ta 20553654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 580
Target Start/End: Complemental strand, 31258112 - 31258066
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttag 580  Q
    |||| |||||||||||||||||||||||||||| ||| |||| ||||    
T  31258112 attgcttttgttttgtttcaaaataataaagtctctaaaataattag 31258066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 542 - 575
Target Start/End: Original strand, 27925772 - 27925805
Alignment:
Q  542 tgttttgtttcaaaataataaagtccctagaata 575  Q
    |||||||||||||||||||||||||| |||||||    
T  27925772 tgttttgtttcaaaataataaagtccttagaata 27925805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 2e-45; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 534 - 658
Target Start/End: Original strand, 18522678 - 18522803
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  18522678 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacata 18522777  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || ||||||||||| |||||||    
T  18522778 aggaaactattcttaaagtatccgta 18522803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 534 - 638
Target Start/End: Original strand, 18519993 - 18520097
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  18519993 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccgttaaacata 18520092  T
Q  634 aggaa 638  Q
    |||||    
T  18520093 aggaa 18520097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 534 - 658
Target Start/End: Original strand, 6110079 - 6110204
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  6110079 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacata 6110178  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || |||||| |||| |||||||    
T  6110179 aggaaactattctcaaagtatccgta 6110204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 534 - 658
Target Start/End: Complemental strand, 10572784 - 10572659
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  10572784 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacata 10572685  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || |||||| |||| |||||||    
T  10572684 aggaaactattctcaaagtatccgta 10572659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 534 - 658
Target Start/End: Original strand, 13211317 - 13211442
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  13211317 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacata 13211416  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || |||||| |||| |||||||    
T  13211417 aggaaactattctcaaagtatccgta 13211442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 534 - 658
Target Start/End: Complemental strand, 15601076 - 15600951
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  15601076 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacata 15600977  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || |||||| |||| |||||||    
T  15600976 aggaaactattctcaaagtatccgta 15600951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 534 - 658
Target Start/End: Complemental strand, 15607621 - 15607496
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  15607621 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacata 15607522  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || |||||| |||| |||||||    
T  15607521 aggaaactattctcaaagtatccgta 15607496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 534 - 658
Target Start/End: Complemental strand, 17781310 - 17781185
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  17781310 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacata 17781211  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || |||||| |||| |||||||    
T  17781210 aggaaactattctcaaagtatccgta 17781185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 534 - 638
Target Start/End: Original strand, 13248622 - 13248726
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  13248622 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacata 13248721  T
Q  634 aggaa 638  Q
    |||||    
T  13248722 aggaa 13248726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 534 - 638
Target Start/End: Complemental strand, 16482675 - 16482571
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  16482675 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacata 16482576  T
Q  634 aggaa 638  Q
    |||||    
T  16482575 aggaa 16482571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 534 - 658
Target Start/End: Complemental strand, 10579547 - 10579422
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||| ||| |||||||||    
T  10579547 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgttaaatggaacattaagtataacttaattgtgagaccccattaaacata 10579448  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || |||||| |||| |||||||    
T  10579447 aggaaactattctcaaagtatccgta 10579422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 534 - 658
Target Start/End: Complemental strand, 15357778 - 15357653
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  15357778 attgattttgttttgtttcaaaataataaagtccctagattagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacata 15357679  T
Q  634 aggaa-ttattcttaaagcatccgta 658  Q
    |||||  |||||| |||| |||||||    
T  15357678 aggaacctattctcaaagtatccgta 15357653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 534 - 658
Target Start/End: Complemental strand, 17200376 - 17200251
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| | ||| |||||||||    
T  17200376 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgatacccctttaaacata 17200277  T
Q  634 a-ggaattattcttaaagcatccgta 658  Q
    | | || ||||||||||| |||||||    
T  17200276 atgaaactattcttaaagtatccgta 17200251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 534 - 658
Target Start/End: Complemental strand, 18640938 - 18640813
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  18640938 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccattaaacata 18640839  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || |||||| |||| |||||||    
T  18640838 aggaaactattctcaaagtatccgta 18640813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 534 - 658
Target Start/End: Complemental strand, 19089937 - 19089812
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  19089937 attgattttgttttgtttcaaaataataaagtccctagattagttagtccgtttaatggaacattaagtataacttaattgtgagacccctttaaacata 19089838  T
Q  634 a-ggaattattcttaaagcatccgta 658  Q
    | | || ||||||||||| |||||||    
T  19089837 atgaaactattcttaaagtatccgta 19089812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 534 - 638
Target Start/End: Original strand, 8490503 - 8490607
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  8490503 attgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagaccccattaaacata 8490602  T
Q  634 aggaa 638  Q
    |||||    
T  8490603 aggaa 8490607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 534 - 638
Target Start/End: Original strand, 13516826 - 13516930
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||| |||||||||||||||||| |||||||||||||    
T  13516826 attgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttcatggaacattaagtataacttaattgtgagaccccgttaaacata 13516925  T
Q  634 aggaa 638  Q
    |||||    
T  13516926 aggaa 13516930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 534 - 661
Target Start/End: Complemental strand, 1647717 - 1647585
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaata----taacttaattgtgagagcccgttaaa 629  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||    |||||||||||||||| |||||||||    
T  1647717 attgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataattaacttaattgtgagaccccgttaaa 1647618  T
Q  630 cataagg-aattattcttaaagcatccgtaatc 661  Q
    ||||||| || |||| |||||| ||||||||||    
T  1647617 cataaggaaactatttttaaagtatccgtaatc 1647585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 538 - 658
Target Start/End: Complemental strand, 15342407 - 15342286
Alignment:
Q  538 attttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacataagga 637  Q
    ||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||| |||||||||||||||||| ||| |||||||||||||    
T  15342407 attttgttttgtttcaaaataataaagtccctagaatagtttgttcgtttaatggaacattaagtataacttaattgtgagaccccattaaacataagga 15342308  T
Q  638 a-ttattcttaaagcatccgta 658  Q
    |  |||||| |||| |||||||    
T  15342307 acctattctcaaagtatccgta 15342286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 534 - 650
Target Start/End: Complemental strand, 32057092 - 32056975
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacat- 632  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| || |||||||| ||||| ||| ||||||||||||     
T  32057092 attgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacatcaagtataactttattgtaagaccccgttaaacata 32056993  T
Q  633 aaggaattattcttaaag 650  Q
    ||| || |||||||||||    
T  32056992 aagaaactattcttaaag 32056975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 539 - 650
Target Start/End: Original strand, 16200145 - 16200257
Alignment:
Q  539 ttttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacataagga- 637  Q
    |||| |||||||||||||||||||||||| ||||||||||||  |||||||||||||||||  |||||||||||||||||| ||| |||||||||||||     
T  16200145 ttttattttgtttcaaaataataaagtccttagaatagttagttcgtttaatggaacattatgtataacttaattgtgagaccccattaaacataaggac 16200244  T
Q  638 attattcttaaag 650  Q
    |||||||||||||    
T  16200245 attattcttaaag 16200257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 539 - 650
Target Start/End: Original strand, 16200451 - 16200563
Alignment:
Q  539 ttttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacataagga- 637  Q
    |||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||  ||||||||||||||||||  ||  ||||||||||||     
T  16200451 ttttattttgtttcaaaataataaagtccttagaatagttagtccgtttaatggaacattatgtataacttaattgtgagactccaataaacataaggac 16200550  T
Q  638 attattcttaaag 650  Q
    |||||||||||||    
T  16200551 attattcttaaag 16200563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 534 - 649
Target Start/End: Original strand, 29924986 - 29925102
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||  ||||| ||||| |||||||||||| ||| ||||| |||    
T  29924986 attgattttgttttgtttcaaaataataaagcccctaaaatagttagtccgtttaatggattattaagtataatttaattgtgagaccccattaaatata 29925085  T
Q  634 agga-attattcttaaa 649  Q
    |||| ||||||||||||    
T  29925086 aggacattattcttaaa 29925102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 534 - 649
Target Start/End: Original strand, 29974139 - 29974255
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||  ||||| ||||| |||||||||||| ||| ||||| |||    
T  29974139 attgattttgttttgtttcaaaataataaagcccctaaaatagttagtccgtttaatggattattaagtataatttaattgtgagaccccattaaatata 29974238  T
Q  634 agga-attattcttaaa 649  Q
    |||| ||||||||||||    
T  29974239 aggacattattcttaaa 29974255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 534 - 580
Target Start/End: Original strand, 18534771 - 18534817
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttag 580  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  18534771 attgattttgttttgtttcaaaataataaagtccatagaatagttag 18534817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 534 - 650
Target Start/End: Complemental strand, 24253581 - 24253463
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgaga-gcccgttaaacat 632  Q
    ||||||||||||||  |||||||||||||||||| |||||||| | |  ||||| |||||||||||| ||| ||||||| ||||||  ||| | ||||||    
T  24253581 attgattttgttttacttcaaaataataaagtccttagaatagctcgttcgtttgatggaacattaagtatgacttaatcgtgagatccccatcaaacat 24253482  T
Q  633 aagga-attattcttaaag 650  Q
    ||||| | |||||||||||    
T  24253481 aaggacactattcttaaag 24253463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 566
Target Start/End: Original strand, 18510937 - 18510969
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtc 566  Q
    |||||||||||||||||||||||||||||||||    
T  18510937 attgattttgttttgtttcaaaataataaagtc 18510969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 6e-45; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 534 - 638
Target Start/End: Original strand, 6094138 - 6094242
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  6094138 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccgttaaacata 6094237  T
Q  634 aggaa 638  Q
    |||||    
T  6094238 aggaa 6094242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 535 - 650
Target Start/End: Original strand, 24636870 - 24636986
Alignment:
Q  535 ttgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacataa 634  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  24636870 ttgattttgttttgtttcaaaataataaagtccctagaatagttagtccttttaatggaacattaagtataacttaattgtgagaccccgttaaacataa 24636969  T
Q  635 gg-aattattcttaaag 650  Q
    || || |||||||||||    
T  24636970 ggaaactattcttaaag 24636986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 534 - 658
Target Start/End: Original strand, 21940680 - 21940805
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  21940680 attgattttgttttgtttcaaaataataaagttcctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacata 21940779  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || |||||| |||| |||||||    
T  21940780 aggaaactattctcaaagtatccgta 21940805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 534 - 650
Target Start/End: Original strand, 24642664 - 24642781
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  24642664 attgattttgttttgtttcaaaatcataaagtccctagaattgttagtccgtttaatggaacattaagtataacttaattgtgagaccccgttaaacata 24642763  T
Q  634 agg-aattattcttaaag 650  Q
    ||| || |||||||||||    
T  24642764 aggaaactattcttaaag 24642781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 534 - 658
Target Start/End: Original strand, 22171504 - 22171627
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||| ||| ||||||||     
T  22171504 attgattttgttttatttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagaccccattaaacat- 22171602  T
Q  634 aggaattattcttaaagcatccgta 658  Q
    || || |||||| |||| |||||||    
T  22171603 agaaactattctcaaagtatccgta 22171627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 534 - 658
Target Start/End: Original strand, 28554898 - 28555023
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||| |||||||||||||||| | |||| ||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  28554898 attgattttgtttagtttcaaaataataaaatacctaaaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacata 28554997  T
Q  634 a-ggaattattcttaaagcatccgta 658  Q
    | | || |||||| |||| |||||||    
T  28554998 atgaaactattctaaaagtatccgta 28555023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 540 - 598
Target Start/End: Original strand, 2375027 - 2375085
Alignment:
Q  540 tttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacatt 598  Q
    |||||||||||||||||||||||| |||||| |||| |||| |  ||||||||||||||    
T  2375027 tttgttttgtttcaaaataataaactccctataataattagtcaatttaatggaacatt 2375085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 590
Target Start/End: Complemental strand, 38232567 - 38232512
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaat 590  Q
    |||||||||||||| ||||||||||||||| || ||||||||||||| | |||||||    
T  38232567 attgattttgttttatttcaaaataataaa-tctctagaatagttagtctgtttaat 38232512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 90; Significance: 4e-43; HSPs: 2)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 534 - 658
Target Start/End: Complemental strand, 2513 - 2388
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  2513 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacata 2414  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || |||||| |||| |||||||    
T  2413 aggaaactattctcaaagtatccgta 2388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 534 - 658
Target Start/End: Complemental strand, 11404 - 11279
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  11404 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacata 11305  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || |||||| |||| |||||||    
T  11304 aggaaactattctcaaagtatccgta 11279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 90; Significance: 4e-43; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 534 - 650
Target Start/End: Original strand, 5544 - 5661
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  5544 attgatttatttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccgttaaacata 5643  T
Q  634 agg-aattattcttaaag 650  Q
    ||| ||||||||||||||    
T  5644 aggaaattattcttaaag 5661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 4e-43; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 534 - 658
Target Start/End: Complemental strand, 21330440 - 21330315
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  21330440 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacata 21330341  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || |||||| |||| |||||||    
T  21330340 aggaaactattctcaaagtatccgta 21330315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 538 - 649
Target Start/End: Original strand, 18796525 - 18796637
Alignment:
Q  538 attttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacataagga 637  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| | | || ||||||||||    
T  18796525 attttgttttgtttcaaaataacaaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacctcttttaacataagga 18796624  T
Q  638 -attattcttaaa 649  Q
     ||||||||||||    
T  18796625 tattattcttaaa 18796637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 535 - 650
Target Start/End: Original strand, 18619821 - 18619936
Alignment:
Q  535 ttgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacataa 634  Q
    |||||||||||||||||||||||||||||||||||| |||| |||| | |||||||||| |||||| | | |||||||| ||||| ||| ||||||| ||    
T  18619821 ttgattttgttttgtttcaaaataataaagtccctataataattagtctgtttaatggagcattaagtgtgacttaattatgaga-cccattaaacaaaa 18619919  T
Q  635 gga-attattcttaaag 650  Q
    ||| |||||||||||||    
T  18619920 ggatattattcttaaag 18619936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 534 - 600
Target Start/End: Complemental strand, 19692728 - 19692662
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaa 600  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||| | |||||||||||||||||    
T  19692728 attgattttgttttgtttcaaaataatgaagtccctagaataattagtctgtttaatggaacattaa 19692662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 584 - 658
Target Start/End: Original strand, 20977957 - 20978032
Alignment:
Q  584 gtttaatggaacattaaatataacttaattgtgagagcccgttaaacataagg-aattattcttaaagcatccgta 658  Q
    |||||||||||||||||  |||| |||||  ||||| ||| ||||| |||||| ||||||||||||| ||||||||    
T  20977957 gtttaatggaacattaagaataatttaatcatgagatcccattaaaaataaggaaattattcttaaaacatccgta 20978032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 4e-43; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 534 - 658
Target Start/End: Original strand, 18252045 - 18252170
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  18252045 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacata 18252144  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || |||||| |||| |||||||    
T  18252145 aggaaactattctcaaagtatccgta 18252170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 534 - 658
Target Start/End: Complemental strand, 21171425 - 21171300
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||| ||||||    
T  21171425 attgattttgttttgtttcaaaataataaagtccttagaatagttagtccgtttcatggaacattaaatataacttaattgtgagaccccgttgaacata 21171326  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || ||||||||||| |||||||    
T  21171325 aggaaactattcttaaagtatccgta 21171300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 538 - 649
Target Start/End: Complemental strand, 3856107 - 3855995
Alignment:
Q  538 attttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacataagga 637  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||    
T  3856107 attttgttttgtttcaaaataacaaagtccctagaatagttagcccgtttaatggaacattaagtataacttaattgtgagaccccattaaacataagga 3856008  T
Q  638 -attattcttaaa 649  Q
     ||||||||||||    
T  3856007 cattattcttaaa 3855995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 534 - 638
Target Start/End: Complemental strand, 27131601 - 27131497
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  27131601 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccattaaacata 27131502  T
Q  634 aggaa 638  Q
    |||||    
T  27131501 aggaa 27131497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 534 - 650
Target Start/End: Complemental strand, 16359227 - 16359110
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||  ||||||||||||||||| |||||||||||||    
T  16359227 attgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagaataacttaattgtgagaccccgttaaacata 16359128  T
Q  634 agg-aattattcttaaag 650  Q
    ||| || |||||||||||    
T  16359127 aggaaactattcttaaag 16359110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 534 - 658
Target Start/End: Complemental strand, 18532706 - 18532581
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  18532706 attgattttgttttgtttcaaaataataaagtccctagaatagttagttcgtttaatggaacattaagtataacttaattgtgagaccccattaaacata 18532607  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || |||||| |||| |||||||    
T  18532606 aggaaactattctcaaagtatccgta 18532581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 534 - 650
Target Start/End: Complemental strand, 27310769 - 27310652
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||| | |||| ||||||    
T  27310769 attgattttgttttgtttcaaaataataaagtccttagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccacgttgaacata 27310670  T
Q  634 agg-aattattcttaaag 650  Q
    ||| || |||||||||||    
T  27310669 aggaaactattcttaaag 27310652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 539 - 637
Target Start/End: Complemental strand, 22657408 - 22657310
Alignment:
Q  539 ttttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacataagga 637  Q
    ||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  22657408 ttttgttttgtttcaaaataataaagttcctagaatagttagtctgtttaatggaacattaaatataacttaattgtgagacccctttaaacataagga 22657310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 534 - 655
Target Start/End: Complemental strand, 36816825 - 36816703
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| | | ||||||||||||||||| ||||| ||||||||||||  ||||||||||||    
T  36816825 attgattttgttttgtttcaaaataatgaagtccctagaatagttcgtctgtttaatggaacattaagtataaattaattgtgagactccgttaaacata 36816726  T
Q  634 agga-attattcttaaagcatcc 655  Q
    |||| ||||||||||||| ||||    
T  36816725 aggacattattcttaaagtatcc 36816703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 553 - 658
Target Start/End: Complemental strand, 12006712 - 12006606
Alignment:
Q  553 aaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacataagga-attattcttaaagc 651  Q
    |||||||||||||||||||||||||||| |  |||||||||| ||||| | |  |||||| |||||| ||| | ||||||||||| |||||| ||||| |    
T  12006712 aaaataataaagtccctagaatagttagtctatttaatggaatattaagtgtgccttaatcgtgagaccccatgaaacataaggacattattattaaaac 12006613  T
Q  652 atccgta 658  Q
    || ||||    
T  12006612 attcgta 12006606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 553 - 658
Target Start/End: Complemental strand, 12014457 - 12014351
Alignment:
Q  553 aaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacataagga-attattcttaaagc 651  Q
    |||||||||||||| ||||||||  ||| ||||||||||||| ||||| | ||| ||||| || ||| ||| |||||||||| ||  ||||||||||| |    
T  12014457 aaaataataaagtcactagaatacatagtccgtttaatggaatattaagtgtaaattaatcgttagatcccattaaacataatgatgttattcttaaaac 12014358  T
Q  652 atccgta 658  Q
    |||||||    
T  12014357 atccgta 12014351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 539 - 599
Target Start/End: Complemental strand, 27277742 - 27277682
Alignment:
Q  539 ttttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacatta 599  Q
    |||||||||||||||||||||||| |||||||||||| |||| || ||||| ||| |||||    
T  27277742 ttttgttttgtttcaaaataataacgtccctagaataattagtccatttaacggagcatta 27277682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 534 - 566
Target Start/End: Complemental strand, 9918103 - 9918071
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtc 566  Q
    ||||||||||||||||| |||||||||||||||    
T  9918103 attgattttgttttgttacaaaataataaagtc 9918071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 534 - 594
Target Start/End: Complemental strand, 30720685 - 30720625
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaa 594  Q
    |||| |||| |||||||| ||||||||||||| ||| ||||| ||||  ||||||||||||    
T  30720685 attggttttattttgttttaaaataataaagttcctggaataattagttcgtttaatggaa 30720625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 86; Significance: 9e-41; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 534 - 658
Target Start/End: Complemental strand, 26182 - 26057
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  26182 attgattttgttttgtttcaaaataataaagtccttagaatagttagtccatttaatggaacattaaatataacttaattgtgagaccccattaaacata 26083  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || |||||| |||| |||||||    
T  26082 aggaaactattctcaaagtatccgta 26057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 9e-41; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 534 - 658
Target Start/End: Complemental strand, 11536254 - 11536129
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||| ||| |||||||||    
T  11536254 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtacaacttaattgtgagaccccattaaacata 11536155  T
Q  634 aggaa-ttattcttaaagcatccgta 658  Q
    |||||  |||||| |||| |||||||    
T  11536154 aggaacctattctcaaagtatccgta 11536129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 534 - 658
Target Start/End: Complemental strand, 11543172 - 11543047
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||| ||| |||||||||    
T  11543172 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtcagaccccattaaacata 11543073  T
Q  634 aggaa-ttattcttaaagcatccgta 658  Q
    |||||  |||||| |||| |||||||    
T  11543072 aggaacctattctcaaagtatccgta 11543047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 534 - 658
Target Start/End: Original strand, 15152458 - 15152583
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  15152458 attgagtttgttttgtttcaaaataataaagttcctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccgttaaacata 15152557  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
     || || ||||||||||| |||||||    
T  15152558 cggaaactattcttaaagtatccgta 15152583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 534 - 658
Target Start/End: Original strand, 29327799 - 29327924
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  29327799 attgattttgttttgtttcaaaataataaagtccctagaatagttagtcagtttaatggaacattaagtataacttaattgtgagaccccattaaacata 29327898  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || |||||| |||| |||||||    
T  29327899 aggaaactattctcaaagtatccgta 29327924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 534 - 658
Target Start/End: Original strand, 12750841 - 12750966
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacat- 632  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||| | ||||||||||     
T  12750841 attgattttgttttgtttcaaagtaataaagtccctagaatagttagtccgtttaatgaaacattaagtataacttaattgtgagacctcgttaaacata 12750940  T
Q  633 aaggaattattcttaaagcatccgta 658  Q
    ||| || ||||||||||| |||||||    
T  12750941 aagaaactattcttaaagtatccgta 12750966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 534 - 658
Target Start/End: Complemental strand, 18258034 - 18257909
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||| ||| |||||||||||||| ||| ||||||| |    
T  18258034 attgattttgttttgtttcaaaataataaagtccctagaataattagtctgtttaatggaacattaagtatgacttaattgtgagaccccattaaacaca 18257935  T
Q  634 agga-attattcttaaagcatccgta 658  Q
    |||| ||||||||||||| |||||||    
T  18257934 aggacattattcttaaagtatccgta 18257909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 534 - 650
Target Start/End: Original strand, 18561022 - 18561139
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||| ||||||| ||||||||||||     
T  18561022 attgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaactgtgagaccccgttaaacatt 18561121  T
Q  634 agg-aattattcttaaag 650  Q
    ||| || |||||||||||    
T  18561122 aggaaactattcttaaag 18561139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 534 - 650
Target Start/End: Original strand, 15148157 - 15148274
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||| |||||| || ||||||||| |||||||||||||||||| |||||||||||||    
T  15148157 attgagtttgttttgtttcaaaataataaagttcctagaatagttagtccgtttgattgaacattaagtataacttaattgtgagaccccgttaaacata 15148256  T
Q  634 agg-aattattcttaaag 650  Q
    ||| || |||||||||||    
T  15148257 aggaaactattcttaaag 15148274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 534 - 650
Target Start/End: Original strand, 12738551 - 12738668
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||   |||||||| |||||||| |||||||||||||||||| |  ||||||||||    
T  12738551 attgattttattttgtttcaaaataataaagtccctagaatagttagtttgtttaatgaaacattaattataacttaattgtgagaccttgttaaacata 12738650  T
Q  634 agg-aattattcttaaag 650  Q
    ||| || |||||||||||    
T  12738651 aggaaactattcttaaag 12738668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 535 - 619
Target Start/End: Original strand, 13392167 - 13392251
Alignment:
Q  535 ttgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgaga 619  Q
    |||| |||||||||||||||||||||||||| ||||||| | |||| | | |||||||| |||||| | | ||||||| ||||||    
T  13392167 ttgactttgttttgtttcaaaataataaagttcctagaacaattagtctgcttaatggagcattaagtgtgacttaatcgtgaga 13392251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 538 - 600
Target Start/End: Original strand, 39111832 - 39111893
Alignment:
Q  538 attttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaa 600  Q
    |||||||||| |||||||| |||||||||||||||||||  || |||||||||| ||||||||    
T  39111832 attttgttttatttcaaaa-aataaagtccctagaatagcgagtccgtttaatgaaacattaa 39111893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 541 - 630
Target Start/End: Original strand, 2364917 - 2365006
Alignment:
Q  541 ttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaac 630  Q
    ||||| |||||||||||||||||||| |||||||| |||| |  | |||||||||||||| | |  |||||| |||||| ||| ||||||    
T  2364917 ttgttatgtttcaaaataataaagtctctagaataattagtctttctaatggaacattaagtgtggcttaatcgtgagaacccattaaac 2365006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 569 - 634
Target Start/End: Original strand, 10234179 - 10234244
Alignment:
Q  569 tagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacataa 634  Q
    |||||||||||| |||||||||| | ||||||||||||||||||  |||||  || ||||||||||    
T  10234179 tagaatagttagtccgtttaatgaaccattaaatataacttaatcatgagattccattaaacataa 10234244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 534 - 658
Target Start/End: Original strand, 7122 - 7247
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||| ||| |||||||||    
T  7122 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatagaacattaagtataacttaattgtgagaccccattaaacata 7221  T
Q  634 a-ggaattattcttaaagcatccgta 658  Q
    | | || |||||| |||| |||||||    
T  7222 atgaaactattctaaaagtatccgta 7247  T

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Target: scaffold0390 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 534 - 658
Target Start/End: Complemental strand, 7126 - 7001
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||| ||  |||||||||    
T  7126 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaactgtgagaccctattaaacata 7027  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || |||||| |||| |||||||    
T  7026 aggaaactattctcaaagtatccgta 7001  T

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Target: scaffold0390; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 534 - 638
Target Start/End: Complemental strand, 14142 - 14038
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||| ||||||| ||| |||||||||    
T  14142 attgattttgttttgtttcaaaataataaagtccctacaatagttagtccgtttaatggaacattaagtataacttaactgtgagaccccattaaacata 14043  T
Q  634 aggaa 638  Q
    |||||    
T  14042 aggaa 14038  T

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Target: scaffold0220 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 534 - 658
Target Start/End: Original strand, 18303 - 18428
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||| |||||||||||||||||| ||| |||||||||    
T  18303 attgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaattgaacattaagtataacttaattgtgagaccccattaaacata 18402  T
Q  634 agg-aattattcttaaagcatccgta 658  Q
    ||| || |||||| |||| |||||||    
T  18403 aggaaactattctcaaagtatccgta 18428  T

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Target: scaffold0657 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 534 - 634
Target Start/End: Original strand, 1008 - 1108
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||| |||||||||||||||||| ||| |||||||||    
T  1008 attgattttgttttgtttcaaaataataaagtccctaaaatagttagtccgtttaatgaaacattaagtataacttaattgtgagaccccattaaacata 1107  T
Q  634 a 634  Q
    |    
T  1108 a 1108  T

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Target: scaffold0008 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 534 - 638
Target Start/End: Complemental strand, 230532 - 230429
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttagcccgtttaatggaacattaaatataacttaattgtgagagcccgttaaacata 633  Q
    |||||||||||||||||||||||||||||||| | || ||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  230532 attgattttgttttgtttcaaaataataaagttcttataatagttagtccgtttaatggaacattaagtataacttaattgtgaga-ccccttaaacata 230434  T
Q  634 aggaa 638  Q
    |||||    
T  230433 aggaa 230429  T

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Target: scaffold0176 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 534 - 580
Target Start/End: Complemental strand, 8495 - 8449
Alignment:
Q  534 attgattttgttttgtttcaaaataataaagtccctagaatagttag 580  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8495 attgattttgttttgtttcaaaataataaagtccctagaatagttag 8449  T

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Target: scaffold0565 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 538 - 569
Target Start/End: Complemental strand, 10158 - 10127
Alignment:
Q  538 attttgttttgtttcaaaataataaagtccct 569  Q
    ||||||||||||||||||||||||||||||||    
T  10158 attttgttttgtttcaaaataataaagtccct 10127  T

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