View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14392_high_44 (Length: 337)
Name: NF14392_high_44
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_high_44 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 40724936 - 40725254
Alignment:
| Q |
1 |
ttcctatgatgataaaaccggcaactgatccaccatttcgtacaccgaatgtaagcgcaaatataatcgcaatcaccattgctataatgttgtaaaagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40724936 |
ttcctatgatgataaaaccggcaactgatccaccatttcgtacaccgaatgtaagcgcaaatataatcgcaatcaccattgctataatgttgtaaaagaa |
40725035 |
T |
|
| Q |
101 |
accggctgtaagagtgcacaaaaaagtgaccataagtcttttagaaaggtttgtgataacactcatgaccttgttgaaggctatgtctttgttgccggta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40725036 |
accggctgtaagagtgcacaaaaaagtgaccataagtctttttgaaaggtttgtgataacactcatgactttgttgaaggctatgtctttgttgccggtg |
40725135 |
T |
|
| Q |
201 |
tagatggaagcgacggtgtaaacaatagcagaggtggagaagagatagagactaaagatgagaatgaaataagcaatcttgatgagaaagaaaatggccc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40725136 |
tagatggaagcgacggtgtaaacaatagcggaggtggagaagagatagaggctaaagatgagaatgaaatatgcaatcttgatgagaaagaaaatggccc |
40725235 |
T |
|
| Q |
301 |
attctttggagatgatttc |
319 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
40725236 |
attctttggtgatgatttc |
40725254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University