View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14392_high_49 (Length: 304)
Name: NF14392_high_49
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_high_49 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 40275936 - 40276158
Alignment:
| Q |
1 |
aagagtgaacacatatggagaaataaatgatcacaagatatctttgatgactatatatttaccttctgtacgcgaccaaaaagtgagaccaaacgattct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40275936 |
aagagtgaacacatatggagaaataaatgatcacaagatatctttgatgactatttatttaccttttgtacgcgaccaaaaagtgagaccaaacgattct |
40276035 |
T |
|
| Q |
101 |
tgatttgccttacacgttcaaggttgagagtactaattctagaggtcaattcatccaaagctggataagcctctttttctagcccttgagtctgatatat |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40276036 |
tgatttgccttacactttcaaggttgagagtactaattcgagaggtcaattcatccaaagctggataagcctctttttctagcccttgagtctgatatat |
40276135 |
T |
|
| Q |
201 |
ataaacacaacacaaatcataga |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
40276136 |
ataaacacaacacaaatcataga |
40276158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 56 - 199
Target Start/End: Original strand, 39624558 - 39624701
Alignment:
| Q |
56 |
tatttaccttctgtacgcgaccaaaaagtgagaccaaacgattcttgatttgccttacacgttcaaggttgagagtactaattctagaggtcaattcatc |
155 |
Q |
| |
|
|||||||||| ||||| |||||| |||||| |||| |||| ||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| | |
|
|
| T |
39624558 |
tatttaccttatgtacacgaccagaaagtgcaaccagacgagtcttgatctgccttacacgttcaagattgagagtactaatttgagaggtcaattcacc |
39624657 |
T |
|
| Q |
156 |
caaagctggataagcctctttttctagcccttgagtctgatata |
199 |
Q |
| |
|
||||||||| |||| ||||| ||| || | |||||||||||||| |
|
|
| T |
39624658 |
caaagctgggtaagtctcttcttcgagtctttgagtctgatata |
39624701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 56 - 199
Target Start/End: Original strand, 39634108 - 39634251
Alignment:
| Q |
56 |
tatttaccttctgtacgcgaccaaaaagtgagaccaaacgattcttgatttgccttacacgttcaaggttgagagtactaattctagaggtcaattcatc |
155 |
Q |
| |
|
|||||||||| ||||| |||||| |||||| |||| |||| ||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| | |
|
|
| T |
39634108 |
tatttaccttatgtacacgaccagaaagtgcaaccagacgagtcttgatctgccttacacgttcaagattgagagtactaatttgagaggtcaattcacc |
39634207 |
T |
|
| Q |
156 |
caaagctggataagcctctttttctagcccttgagtctgatata |
199 |
Q |
| |
|
||||||||| |||| ||||| ||| || | |||||||||||||| |
|
|
| T |
39634208 |
caaagctgggtaagtctcttcttcgagtctttgagtctgatata |
39634251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 40276154 - 40276199
Alignment:
| Q |
244 |
atagaatagaatgtgtacccaataaatttatatcaactgttgaata |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40276154 |
atagaatagaatgtgtacccaataaatttatatcaactgttgaata |
40276199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University