View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14392_high_5 (Length: 670)

Name: NF14392_high_5
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14392_high_5
NF14392_high_5
[»] scaffold0498 (1 HSPs)
scaffold0498 (1-99)||(11875-11973)
[»] chr7 (6 HSPs)
chr7 (1-99)||(11510002-11510100)
chr7 (1-99)||(18148990-18149089)
chr7 (23-99)||(34705525-34705601)
chr7 (95-172)||(22535348-22535425)
chr7 (1-52)||(22530377-22530428)
chr7 (9-75)||(21860806-21860872)
[»] chr4 (8 HSPs)
chr4 (1-99)||(15703289-15703387)
chr4 (1-99)||(23972692-23972790)
chr4 (3-99)||(14644470-14644566)
chr4 (11-99)||(19613287-19613375)
chr4 (8-99)||(11150174-11150265)
chr4 (4-101)||(25127547-25127651)
chr4 (5-73)||(18874736-18874804)
chr4 (5-93)||(4529645-4529731)
[»] chr3 (8 HSPs)
chr3 (1-99)||(3473168-3473266)
chr3 (1-99)||(39729018-39729117)
chr3 (4-99)||(18539481-18539576)
chr3 (11-99)||(15778669-15778757)
chr3 (5-93)||(19595579-19595665)
chr3 (17-68)||(18694944-18694995)
chr3 (17-68)||(18710463-18710514)
chr3 (33-93)||(3413897-3413956)
[»] scaffold0005 (1 HSPs)
scaffold0005 (3-99)||(172726-172822)
[»] chr1 (7 HSPs)
chr1 (1-99)||(12784855-12784954)
chr1 (4-93)||(52272509-52272596)
chr1 (11-99)||(23633615-23633703)
chr1 (30-99)||(29447135-29447204)
chr1 (11-99)||(41138359-41138447)
chr1 (14-69)||(18515086-18515141)
chr1 (14-63)||(89769-89818)
[»] chr8 (4 HSPs)
chr8 (1-99)||(9882096-9882194)
chr8 (1-99)||(4860677-4860774)
chr8 (1-99)||(40387361-40387459)
chr8 (44-96)||(17289350-17289402)
[»] chr2 (8 HSPs)
chr2 (1-99)||(34892043-34892141)
chr2 (5-90)||(16933155-16933239)
chr2 (11-99)||(16092094-16092181)
chr2 (11-99)||(20265045-20265133)
chr2 (44-95)||(24851751-24851802)
chr2 (4-91)||(22385348-22385434)
chr2 (17-75)||(20178492-20178550)
chr2 (14-68)||(32625721-32625775)
[»] chr6 (5 HSPs)
chr6 (1-99)||(19770380-19770479)
chr6 (5-89)||(9547493-9547577)
chr6 (5-75)||(22468641-22468711)
chr6 (44-99)||(19565551-19565606)
chr6 (47-95)||(19568183-19568233)
[»] scaffold0024 (2 HSPs)
scaffold0024 (4-99)||(106542-106637)
scaffold0024 (49-99)||(108909-108958)
[»] chr5 (2 HSPs)
chr5 (11-99)||(32039497-32039585)
chr5 (4-99)||(39437326-39437424)
[»] scaffold0281 (1 HSPs)
scaffold0281 (4-99)||(427-522)
[»] scaffold0103 (1 HSPs)
scaffold0103 (5-90)||(17037-17121)
[»] scaffold0043 (1 HSPs)
scaffold0043 (4-90)||(67141-67226)


Alignment Details
Target: scaffold0498 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 11973 - 11875
Alignment:
Q  1 tattaatgtctacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaatgaaatttta 99  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  11973 tattaatgtctacttgatattcttaaatgttgttgatgcttatatgttattataagacgttgattgatgcctatttgatttttattaaatgaaatttta 11875  T

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Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 11510002 - 11510100
Alignment:
Q  1 tattaatgtctacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaatgaaatttta 99  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11510002 tattaatgtctacttgatattcttaaatgttattgatgcttatatgttattataagatgttgattgatgcctatttgatttttattaaatgaaatttta 11510100  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 18148990 - 18149089
Alignment:
Q  1 tattaatgtctacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttga-tttttattaaatgaaatttta 99  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| | |||||||||||||||| |||||||||||||||||||||    
T  18148990 tattaatgtctacttgatattcttaaatgttgttgatgcttatatgttattataagatgataattgatgcctatttgattttttattaaatgaaatttta 18149089  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 34705601 - 34705525
Alignment:
Q  23 ttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaatgaaatttta 99  Q
    ||||||||||||||| |||||||||||||| | |||||||||||| |||||||||||||||| ||||||||||||||    
T  34705601 ttaaatgttgttgatacttatatgttattacaagatgttgattgacgcctatttgatttttactaaatgaaatttta 34705525  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 95 - 172
Target Start/End: Original strand, 22535348 - 22535425
Alignment:
Q  95 ttttaaagcaaacgccaagaaaacactgcaaacttggatgcgatatgactttcccacacccacttgtaagctttcaat 172  Q
    |||| |||||||||||||||||||||||||| |||||||| |||| || ||||||||||||  |||||||||||||||    
T  22535348 ttttgaagcaaacgccaagaaaacactgcaatcttggatgggataagattttcccacacccttttgtaagctttcaat 22535425  T

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Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 22530377 - 22530428
Alignment:
Q  1 tattaatgtctacttgatattcttaaatgttgttgattcttatatgttatta 52  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22530377 tattaatgtctacttgatattcttaaatgttgttgattcttataagttatta 22530428  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 21860806 - 21860872
Alignment:
Q  9 tctacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatt 75  Q
    |||||||||||||| ||||||||||||||  ||| |||| || ||| ||||||||||| ||||||||    
T  21860806 tctacttgatattcgtaaatgttgttgatgtttacatgtcatcataagatgttgattggtgcctatt 21860872  T

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Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 15703387 - 15703289
Alignment:
Q  1 tattaatgtctacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaatgaaatttta 99  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  15703387 tattaatgtctacttgatattcttaaatgttgttgatgcttatatgttattataagatgttgattgatacctatttgatttttattaaatgaaatttta 15703289  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 23972790 - 23972692
Alignment:
Q  1 tattaatgtctacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaatgaaatttta 99  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||    
T  23972790 tattaatgtctacttgatattcttaaatgttgttgatgcttatatgttattatgagatgttgattgatacctatttgatttttattaaatgaaatttta 23972692  T

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Target: chr4; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 14644566 - 14644470
Alignment:
Q  3 ttaatgtctacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaatgaaatttta 99  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||    
T  14644566 ttaatgtctacttgatattcttaaatgttgttgatgcttatatgttattataagatgttgattgatgtctatttgattttttttaaatgaaatttta 14644470  T

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Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 19613287 - 19613375
Alignment:
Q  11 tacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaatgaaatttta 99  Q
    ||||||||||||||||||||| | ||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||    
T  19613287 tacttgatattcttaaatgttctcgatgcttatatgttattataagatgttggttgatgcctatttgatttttattaaatgaaacttta 19613375  T

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Target: chr4; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 11150265 - 11150174
Alignment:
Q  8 gtctacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgat-ttttattaaatgaaatttta 99  Q
    ||||||||||||||||||||||||||||| || ||||||||||||   |||||||||||||||||||||||| ||||||||||||||||||||    
T  11150265 gtctacttgatattcttaaatgttgttga-tcgtatatgttattaatagatgttgattgatgcctatttgatgttttattaaatgaaatttta 11150174  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 25127547 - 25127651
Alignment:
Q  4 taatgtctacttgatattcttaaatgttgttgattcttatatgttat--tataggatgttgattgatgcctatttg-----atttttattaaatgaaatt 96  Q
    |||||||||||| |||||||||||||||||||||  ||||||| |||  |||| |||||||||||||| |||||||      ||||||||||||||||||    
T  25127547 taatgtctacttaatattcttaaatgttgttgatggttatatgctattatataagatgttgattgatgtctatttgtttttttttttattaaatgaaatt 25127646  T
Q  97 ttaaa 101  Q
    |||||    
T  25127647 ttaaa 25127651  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 18874804 - 18874736
Alignment:
Q  5 aatgtctacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgccta 73  Q
    ||||||||||||||||||||||||| |||| || |||| ||| || |||| ||||||||||||||||||    
T  18874804 aatgtctacttgatattcttaaatggtgttaatgcttacatgctaatataagatgttgattgatgccta 18874736  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 4529731 - 4529645
Alignment:
Q  5 aatgtctacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaatgaa 93  Q
    |||| ||||||||||||||||| || ||||||| |||| ||||||||||| |||||| ||| |||| || |||| ||||||||||||||    
T  4529731 aatgcctacttgatattcttaattgatgttgatacttacatgttattataagatgttaattaatgcata-ttga-ttttattaaatgaa 4529645  T

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Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 3473168 - 3473266
Alignment:
Q  1 tattaatgtctacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaatgaaatttta 99  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3473168 tattaatgtctacttgatattcttaaatgttgttgatgcttatatcttattataagatgttgattgatgcctatttgatttttattaaatgaaatttta 3473266  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 39729018 - 39729117
Alignment:
Q  1 tattaatgtctacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttga-tttttattaaatgaaatttta 99  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  39729018 tattaatgtctacttgatattcttaaatgttgttgatgcttatatgttcttataagatgttgattgatgcctatttgattttttattaaatgaaatttta 39729117  T

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Target: chr3; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 18539481 - 18539576
Alignment:
Q  4 taatgtctacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaatgaaatttta 99  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||| |||||||||||||||||||| ||||||||||    
T  18539481 taatgtctacttgatattcttaaatgttgttgatgcttatatgtcattataagatgttgattgacgcctatttgatttttattaagtgaaatttta 18539576  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 15778669 - 15778757
Alignment:
Q  11 tacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaatgaaatttta 99  Q
    ||||||||||||||||||||| | ||| |||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||| ||||    
T  15778669 tacttgatattcttaaatgttctcgatgcttatatgttattataagatgttggttgattcctatttgatttttattaaatgaaacttta 15778757  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 19595665 - 19595579
Alignment:
Q  5 aatgtctacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaatgaa 93  Q
    ||||| |||||||||| |||| ||| || |||| ||| |||||||| ||| |||||||||||||||||| |||||||||||||||||||    
T  19595665 aatgtgtacttgatatacttagatggtgatgatacttgtatgttat-ataagatgttgattgatgccta-ttgatttttattaaatgaa 19595579  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 18694944 - 18694995
Alignment:
Q  17 atattcttaaatgttgttgattcttatatgttattataggatgttgattgat 68  Q
    ||||||||||||||||||||| || | |||||||||||||||||||| ||||    
T  18694944 atattcttaaatgttgttgatgctcacatgttattataggatgttgactgat 18694995  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 18710463 - 18710514
Alignment:
Q  17 atattcttaaatgttgttgattcttatatgttattataggatgttgattgat 68  Q
    ||||||||||||||||||||| || | |||||||||||||||||||| ||||    
T  18710463 atattcttaaatgttgttgatgctcacatgttattataggatgttgactgat 18710514  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 3413897 - 3413956
Alignment:
Q  33 ttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaatgaa 93  Q
    ||||| ||||||||||||| ||  || |||||||||||||| |||||||||||||||||||    
T  3413897 ttgatgcttatatgttattgtaatatattgattgatgccta-ttgatttttattaaatgaa 3413956  T

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Target: scaffold0005 (Bit Score: 81; Significance: 9e-38; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 172726 - 172822
Alignment:
Q  3 ttaatgtctacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaatgaaatttta 99  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||    
T  172726 ttaatgtctacttgatattcttaaatgttgttgatgcttatatgttattataagatgttgattgatgtctatttgattttttttaaatgaaatttta 172822  T

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Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 12784954 - 12784855
Alignment:
Q  1 tattaatgtctacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgat-ttttattaaatgaaatttta 99  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||    
T  12784954 tattaatgtctacttgatattcttaaatgttgttgatgcttatatgttattataagatgttgattgatgcctatttgattttttattaaatgatatttta 12784855  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 52272596 - 52272509
Alignment:
Q  4 taatgtctacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaatgaa 93  Q
    ||||| |||||||||||||||||||||||||||| ||| ||||||| |||| |||||||||||||||||| |||||||||||||||||||    
T  52272596 taatgcctacttgatattcttaaatgttgttgatacttgtatgtta-tataagatgttgattgatgccta-ttgatttttattaaatgaa 52272509  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 23633615 - 23633703
Alignment:
Q  11 tacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaatgaaatttta 99  Q
    ||||||||||||||||||||| | ||| |||||||||||||||| ||||||| ||||||| ||||||| ||||||||||||||| ||||    
T  23633615 tacttgatattcttaaatgttctcgatgcttatatgttattataagatgttggttgatgcttatttgacttttattaaatgaaacttta 23633703  T

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Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 29447135 - 29447204
Alignment:
Q  30 ttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaatgaaatttta 99  Q
    |||||||| || | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29447135 ttgttgatgctcacatgttattataagatgttgattgatgcctatttgatttttattaaatgaaatttta 29447204  T

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Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 41138359 - 41138447
Alignment:
Q  11 tacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaatgaaatttta 99  Q
    ||||||||||||||||| ||| | ||| ||||||||||||||||  |||||| ||||||||||||||||||||||||||| ||| ||||    
T  41138359 tacttgatattcttaaaagttctcgatgcttatatgttattataaaatgttggttgatgcctatttgatttttattaaattaaacttta 41138447  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 18515086 - 18515141
Alignment:
Q  14 ttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatg 69  Q
    |||||||||||||||||||||||| || | ||||||||||| |||||||| |||||    
T  18515086 ttgatattcttaaatgttgttgatgctcacatgttattataagatgttgactgatg 18515141  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 89818 - 89769
Alignment:
Q  14 ttgatattcttaaatgttgttgattcttatatgttattataggatgttga 63  Q
    |||||||||||||||||||||||| || | ||||||||||| ||||||||    
T  89818 ttgatattcttaaatgttgttgatgctcacatgttattataagatgttga 89769  T

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Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 9882194 - 9882096
Alignment:
Q  1 tattaatgtctacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaatgaaatttta 99  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||    
T  9882194 tattaatatctacttgatattcttaaatgttgttgatgcttatatgttattatgagatgttgattgattcctatttgatttttattaaatgaaatttta 9882096  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 4860677 - 4860774
Alignment:
Q  1 tattaatgtctacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaatgaaatttta 99  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||  || ||||||||||||||||||||||||||||||||||||||||    
T  4860677 tattaatgtctacttgatattcttaaatgttgttgatgcttatatgttactata-aatattgattgatgcctatttgatttttattaaatgaaatttta 4860774  T

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Target: chr8; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 40387459 - 40387361
Alignment:
Q  1 tattaatgtctacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaatgaaatttta 99  Q
    ||||||| |||| ||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  40387459 tattaatatctaattgatattcttaaatgttgttgatgtttatatgttattataagatgttgattgatgcctatttgatttttattaaataaaatttta 40387361  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 17289402 - 17289350
Alignment:
Q  44 atgttattataggatgttgattgatgcctatttgatttttattaaatgaaatt 96  Q
    ||||||||||| |||||||||||||||||||| |||||||| ||||| |||||    
T  17289402 atgttattataagatgttgattgatgcctattagatttttactaaattaaatt 17289350  T

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Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 34892141 - 34892043
Alignment:
Q  1 tattaatgtctacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaatgaaatttta 99  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||    
T  34892141 tattaatgtctacttgacattcttaaatgttgttgatgcttatatgttattatatgattttgattgatgcctatttgatttttattaaaggaaatttta 34892043  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 16933155 - 16933239
Alignment:
Q  5 aatgtctacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaat 90  Q
    ||||||||||||||||||||||||||||||||   ||||||||||||||| ||||| |||||||||||| ||||||||||||||||    
T  16933155 aatgtctacttgatattcttaaatgttgttgacgtttatatgttattataagatgtcgattgatgccta-ttgatttttattaaat 16933239  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 16092181 - 16092094
Alignment:
Q  11 tacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaatgaaatttta 99  Q
    ||||||||||||||||||||| | ||| |||||||||||||||| ||||||| ||||||||||||||| ||||||||||| ||| ||||    
T  16092181 tacttgatattcttaaatgttctcgatgcttatatgttattataagatgttggttgatgcctatttga-ttttattaaatcaaacttta 16092094  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 20265045 - 20265133
Alignment:
Q  11 tacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaatgaaatttta 99  Q
    ||||||||||||||||||||| | ||| |||||||||||||||  ||||||  |||||| ||||| |||||||||||||||||| ||||    
T  20265045 tacttgatattcttaaatgttatcgatgcttatatgttattatgagatgttagttgatgtctattcgatttttattaaatgaaacttta 20265133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 24851751 - 24851802
Alignment:
Q  44 atgttattataggatgttgattgatgcctatttgatttttattaaatgaaat 95  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  24851751 atgttattataagatgttgattgatgtctatttgatttttattaaatgaaat 24851802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 22385434 - 22385348
Alignment:
Q  4 taatgtctacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaatg 91  Q
    |||||||||||||||||||| ||||| |||| || ||||  |||||||||| ||||||||||| ||  ||  ||||||||||||||||    
T  22385434 taatgtctacttgatattctgaaatgatgttaatgcttagttgttattataagatgttgattgttgttta-ctgatttttattaaatg 22385348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 20178550 - 20178492
Alignment:
Q  17 atattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatt 75  Q
    ||||||||||||||||||||| ||||  ||| ||| || ||||||||||||||||||||    
T  20178550 atattcttaaatgttgttgatgcttacctgtcattttaagatgttgattgatgcctatt 20178492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 32625721 - 32625775
Alignment:
Q  14 ttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgat 68  Q
    |||||||||||||||||||||||| || | || |||||||| |||||||| ||||    
T  32625721 ttgatattcttaaatgttgttgatgctcacatattattataagatgttgactgat 32625775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 8e-35; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 19770380 - 19770479
Alignment:
Q  1 tattaatgtctacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttga-tttttattaaatgaaatttta 99  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||| |||||||| |||||||||||||||||||||    
T  19770380 tattaatgtctacttgatattcttaaatgttgttgatgcttatatgttattataagatgttaattgatgtctatttgattttttattaaatgaaatttta 19770479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 9547577 - 9547493
Alignment:
Q  5 aatgtctacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaa 89  Q
    ||||| |||||||||| |||||||||||||||| |||||||||||||||| |||||||||| |||||||||| ||||||||||||    
T  9547577 aatgtgtacttgatatacttaaatgttgttgatgcttatatgttattataagatgttgattaatgcctattttatttttattaaa 9547493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 22468711 - 22468641
Alignment:
Q  5 aatgtctacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatt 75  Q
    |||||||| |||||||||||||||||||||||| |||| ||||||||||| ||||||||||  ||||||||    
T  22468711 aatgtctatttgatattcttaaatgttgttgatgcttacatgttattataagatgttgatttctgcctatt 22468641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 19565551 - 19565606
Alignment:
Q  44 atgttattataggatgttgattgatgcctatttgatttttattaaatgaaatttta 99  Q
    ||||||||||| |||||||||| || ||||||||||||||||||||||||||||||    
T  19565551 atgttattataagatgttgattcatacctatttgatttttattaaatgaaatttta 19565606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 19568183 - 19568233
Alignment:
Q  47 ttattataggatgttgattgatgcc--tatttgatttttattaaatgaaat 95  Q
    |||||||| ||||||||||||| ||  ||||||||||||||||||||||||    
T  19568183 ttattataagatgttgattgatacccctatttgatttttattaaatgaaat 19568233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 61; Significance: 8e-26; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 106637 - 106542
Alignment:
Q  4 taatgtctacttgatattcttaaatgttgttg-attcttatatgttattataggatgttgattgatgcctatttgatttttattaaatgaaatttta 99  Q
    ||||||||||||||||||||||||| || ||  || |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  106637 taatgtctacttgatattcttaaatatttttttatgcttatatgttattataagatgttgattgatgccta-ttgatttttattaaatgaaatttta 106542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 108958 - 108909
Alignment:
Q  49 attataggatgttgattgatgcctatttgatttttattaaatgaaatttta 99  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  108958 attataagatgttgattgatgcctatt-gatttttattaaatgaaatttta 108909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 8e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 32039585 - 32039497
Alignment:
Q  11 tacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaatgaaatttta 99  Q
    ||||||||||||||||||||| | ||| |||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||| ||||    
T  32039585 tacttgatattcttaaatgttctcgatgcttatatgttattataagatgttggttgattcctatttgatttttattaaatgaaacttta 32039497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 39437326 - 39437424
Alignment:
Q  4 taatgtctacttgatattcttaaatgttgttgattcttatatgttat--tataggatgttgattgatgcctatttga-tttttattaaatgaaatttta 99  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||  |||| |||||||||||||| |  ||||| |||||||||| ||||||||||    
T  39437326 taatgtctacttgatattcttaaatgttgttgatgcttatatgctattatataagatgttgattgatgtcagtttgattttttattaattgaaatttta 39437424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 522 - 427
Alignment:
Q  4 taatgtctacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaatgaaatttta 99  Q
    ||||||||| | |||||||||||||||||||||| |||||||| ||||||| || ||||||||||||| |||| ||||||||||||||||| ||||    
T  522 taatgtctagtcgatattcttaaatgttgttgatgcttatatgctattataagacgttgattgatgccgatttaatttttattaaatgaaacttta 427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 17121 - 17037
Alignment:
Q  5 aatgtctacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaat 90  Q
    ||||||||||||||||||||||||||||||||   ||||||||||||||| ||||| |||||||||||| ||||||||||||||||    
T  17121 aatgtctacttgatattcttaaatgttgttgacgtttatatgttattataagatgtcgattgatgccta-ttgatttttattaaat 17037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 67141 - 67226
Alignment:
Q  4 taatgtctacttgatattcttaaatgttgttgattcttatatgttattataggatgttgattgatgcctatttgatttttattaaat 90  Q
    |||||||||||||||| ||| ||||| |||||||  ||| ||||||||||| || ||| |||| |||||| ||||||||||||||||    
T  67141 taatgtctacttgataatctgaaatgatgttgatgtttagatgttattataagacgttaattggtgccta-ttgatttttattaaat 67226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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