View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14392_high_51 (Length: 297)

Name: NF14392_high_51
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14392_high_51
NF14392_high_51
[»] chr4 (3 HSPs)
chr4 (19-288)||(34621690-34621953)
chr4 (20-82)||(49219128-49219190)
chr4 (113-150)||(41162203-41162240)
[»] chr1 (2 HSPs)
chr1 (20-82)||(12564893-12564955)
chr1 (122-157)||(6933118-6933153)
[»] chr8 (2 HSPs)
chr8 (122-157)||(31167861-31167896)
chr8 (114-159)||(7026605-7026650)
[»] chr7 (3 HSPs)
chr7 (122-157)||(31691271-31691306)
chr7 (20-82)||(10190784-10190846)
chr7 (20-80)||(44151499-44151559)
[»] chr5 (4 HSPs)
chr5 (113-152)||(14257346-14257385)
chr5 (20-82)||(21768216-21768278)
chr5 (115-153)||(30845201-30845239)
chr5 (112-152)||(11095603-11095643)
[»] chr2 (1 HSPs)
chr2 (122-157)||(6772696-6772731)
[»] chr6 (3 HSPs)
chr6 (111-152)||(30865355-30865396)
chr6 (46-82)||(2112189-2112225)
chr6 (30-82)||(28660789-28660841)
[»] scaffold0024 (1 HSPs)
scaffold0024 (46-82)||(27565-27601)
[»] chr3 (3 HSPs)
chr3 (113-157)||(2201000-2201044)
chr3 (122-154)||(4534500-4534532)
chr3 (26-82)||(47904088-47904144)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 34621953 - 34621690
Alignment:
Q  19 gtttcaacttatttccgtaagctcgtaaagataggttatgaaaacaatttatagtttatatgaatgtagcttatagcttttgttgtagaaataacttatg 118  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  34621953 gtttcaacttatttccgtaagctcgtaaagatacgttatgaaaacaatttatagtttatatgactgtagcttatagcttttgttgtagaaataacttatg 34621854  T
Q  119 ttgtaagtgcttagttaagttgtttatccaaacagagtcgtgttggagataaaagatactcacagtttt-tacatcattggatataaatataaaatgtac 217  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34621853 ttgtaagtgtttagttaagttgtttatccaaacagagtcatgttggagataaaagatactcacagttttatacatcattggatataaatataaaatgtac 34621754  T
Q  218 acaattttcacaccatagtgaatagtgaattttaacatgagaggtgtggatcctggttggaagagtataat 288  Q
    ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34621753 acaattttcacacc-------atagtgaattttaacatgagaggtgtggatcctggttggaagagtataat 34621690  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 49219190 - 49219128
Alignment:
Q  20 tttcaacttatttccgtaagctcgtaaagataggttatgaaaacaatttatagtttatatgaa 82  Q
    ||||| ||||||||| ||| ||| | ||||||| |||||||||||| |||||| |||||||||    
T  49219190 tttcagcttatttccataatctctttaagatagtttatgaaaacaacttatagcttatatgaa 49219128  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 41162203 - 41162240
Alignment:
Q  113 cttatgttgtaagtgcttagttaagttgtttatccaaa 150  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  41162203 cttatgttataagtgcttaattaagttgtttatccaaa 41162240  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 12564893 - 12564955
Alignment:
Q  20 tttcaacttatttccgtaagctcgtaaagataggttatgaaaacaatttatagtttatatgaa 82  Q
    ||||| ||||||||||||||| |  |||||||| |||||||||||| |||||| |||||||||    
T  12564893 tttcagcttatttccgtaagcactaaaagatagcttatgaaaacaacttatagcttatatgaa 12564955  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 157
Target Start/End: Original strand, 6933118 - 6933153
Alignment:
Q  122 taagtgcttagttaagttgtttatccaaacagagtc 157  Q
    |||||||||| |||||||||||||||||||||||||    
T  6933118 taagtgcttaattaagttgtttatccaaacagagtc 6933153  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 157
Target Start/End: Complemental strand, 31167896 - 31167861
Alignment:
Q  122 taagtgcttagttaagttgtttatccaaacagagtc 157  Q
    |||||||||| |||||||||||||||||||||||||    
T  31167896 taagtgcttaattaagttgtttatccaaacagagtc 31167861  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 7026650 - 7026605
Alignment:
Q  114 ttatgttgtaagtgcttagttaagttgtttatccaaacagagtcgt 159  Q
    ||||| ||||| |||||| ||||||||||||||||||||| |||||    
T  7026650 ttatgctgtaaatgcttaattaagttgtttatccaaacagggtcgt 7026605  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 157
Target Start/End: Original strand, 31691271 - 31691306
Alignment:
Q  122 taagtgcttagttaagttgtttatccaaacagagtc 157  Q
    |||||||||| |||||||||||||||||||||||||    
T  31691271 taagtgcttaattaagttgtttatccaaacagagtc 31691306  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 10190846 - 10190784
Alignment:
Q  20 tttcaacttatttccgtaagctcgtaaagataggttatgaaaacaatttatagtttatatgaa 82  Q
    ||||||| ||||||| ||||||  |||  |||| |||||||||||||||| ||||||||||||    
T  10190846 tttcaacgtatttccataagcttttaagaatagtttatgaaaacaatttacagtttatatgaa 10190784  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 44151499 - 44151559
Alignment:
Q  20 tttcaacttatttccgtaagctcgtaaagataggttatgaaaacaatttatagtttatatg 80  Q
    ||||| ||||||||| ||||||  | ||||||| |||||||||||| |||||| |||||||    
T  44151499 tttcagcttatttccataagcttttcaagatagtttatgaaaacaacttatagcttatatg 44151559  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 14257385 - 14257346
Alignment:
Q  113 cttatgttgtaagtgcttagttaagttgtttatccaaaca 152  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  14257385 cttatgttataagtgcttaattaagttgtttatccaaaca 14257346  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 21768216 - 21768278
Alignment:
Q  20 tttcaacttatttccgtaagctcgtaaagataggttatgaaaacaatttatagtttatatgaa 82  Q
    ||||||||||||| ||||||||| | ||||||  |||||||||||  ||| ||||||||||||    
T  21768216 tttcaacttattttcgtaagctcttcaagataacttatgaaaacagcttaaagtttatatgaa 21768278  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 30845239 - 30845201
Alignment:
Q  115 tatgttgtaagtgcttagttaagttgtttatccaaacag 153  Q
    |||||| |||||||||| |||||||||||||||||||||    
T  30845239 tatgttataagtgcttaattaagttgtttatccaaacag 30845201  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 11095603 - 11095643
Alignment:
Q  112 acttatgttgtaagtgcttagttaagttgtttatccaaaca 152  Q
    |||||| | ||||||| ||||||||||||||||||||||||    
T  11095603 acttatatggtaagtgtttagttaagttgtttatccaaaca 11095643  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 157
Target Start/End: Original strand, 6772696 - 6772731
Alignment:
Q  122 taagtgcttagttaagttgtttatccaaacagagtc 157  Q
    |||||||||| |||||||||||||||||||||||||    
T  6772696 taagtgcttaattaagttgtttatccaaacagagtc 6772731  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 30865396 - 30865355
Alignment:
Q  111 aacttatgttgtaagtgcttagttaagttgtttatccaaaca 152  Q
    |||||||||| ||| |||||| ||||||||||||||||||||    
T  30865396 aacttatgttataaatgcttaattaagttgtttatccaaaca 30865355  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 2112225 - 2112189
Alignment:
Q  46 aagataggttatgaaaacaatttatagtttatatgaa 82  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  2112225 aagatagtttatgaaaacaacttatagtttatatgaa 2112189  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 28660789 - 28660841
Alignment:
Q  30 tttccgtaagctcgtaaagataggttatgaaaacaatttatagtttatatgaa 82  Q
    ||||| ||||||  ||| ||||| |||||||||||||||||| ||||||||||    
T  28660789 tttccataagcttttaaggatagtttatgaaaacaatttataatttatatgaa 28660841  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 27601 - 27565
Alignment:
Q  46 aagataggttatgaaaacaatttatagtttatatgaa 82  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  27601 aagatagtttatgaaaacaacttatagtttatatgaa 27565  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 2201044 - 2201000
Alignment:
Q  113 cttatgttgtaagtgcttagttaagttgtttatccaaacagagtc 157  Q
    |||||| | |||| ||||||||||||||||||||| |||||||||    
T  2201044 cttatgctataagcgcttagttaagttgtttatcctaacagagtc 2201000  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 4534500 - 4534532
Alignment:
Q  122 taagtgcttagttaagttgtttatccaaacaga 154  Q
    |||||||||| ||||||||||||||||||||||    
T  4534500 taagtgcttaattaagttgtttatccaaacaga 4534532  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 47904088 - 47904144
Alignment:
Q  26 cttatttccgtaagctcgtaaagataggttatgaaaacaatttatagtttatatgaa 82  Q
    ||||||||||||||||| | | ||||| |||||||||| | |||||| |||||||||    
T  47904088 cttatttccgtaagctcttcacgatagcttatgaaaaccacttatagattatatgaa 47904144  T

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