View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14392_high_55 (Length: 273)
Name: NF14392_high_55
Description: NF14392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14392_high_55 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 58 - 234
Target Start/End: Original strand, 14216574 - 14216748
Alignment:
| Q |
58 |
taaaatcatgggtatacaaactacaaagtgtcaatccaaacatgtatttataagactctgtatgacttatacaacgatggattagacaaaatcaccgtat |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14216574 |
taaaatcatgggtatacaaactacaaagtgtcaatccaaacaagtatttataagactct--atgacttatacaacgatggattagacaaaatcaccgtat |
14216671 |
T |
|
| Q |
158 |
ttttgttcaagttacaaaatgaaaatgtagtttttgcaaactcacagcaacttattgttattttgtcaatcacacgc |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14216672 |
ttttgttcaagttacaaaatgaaaatgtagtttttgcaaactcacagcaacttattgttattttgtcaatcacacgc |
14216748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University